✎ data

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<h2>LRH-1 ChIP-seq Data</h2>
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<p>
Our ChIP-seq analysis of LRH-1 can be found at:
<a href="http://cbcl.ics.uci.edu/public_data/LRH-1" class="urlextern" title="http://cbcl.ics.uci.edu/public_data/LRH-1" rel="nofollow">http://cbcl.ics.uci.edu/public_data/LRH-1</a>
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<h2>FXR ChIP-seq Data</h2>
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<p>
<a href="http://cbcl.ics.uci.edu/public_data/FXR/" class="urlextern" title="http://cbcl.ics.uci.edu/public_data/FXR/" rel="nofollow">http://cbcl.ics.uci.edu/public_data/FXR/</a>
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<h2>SREBP-2 ChIP-seq Data</h2>
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<p>
ChipSeq was performed on SREBP-2 and peaks were called using <a href="http://web.me.com/kaestnerlab1/GLITR/" class="urlextern" title="http://web.me.com/kaestnerlab1/GLITR/" rel="nofollow">GLITR</a>.  We also re-analyzed SREBP-1 using GLITR.
Supplemental Tables, Figures, and datasets are available:
<a href="http://cbcl.ics.uci.edu/public_data/SREBP2/" class="urlextern" title="http://cbcl.ics.uci.edu/public_data/SREBP2/" rel="nofollow">SREBP2</a>
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<h2>SREBP-1 ChIP-seq Data</h2>
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<p>
Included here is ChIP-Seq raw and processed data from:
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<p>
<em>Genome-wide analysis of SREBP-1 binding in mouse liver chromatin reveals a preference for promoter proximal binding to a new motif.</em>
PNAS 2009 106:13765-13769; Young-Kyo Seo, Hansook Kim Chong, Aniello M. Infante, Seung-Soon Im, Xiaohui Xie, and Timothy F. Osborne
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<ul>
<li class="level1">  Raw sequence data (raw_data/*_sequence.txt) was processed using eland to create raw/*_eland_multi.txt</li>
<li class="level1">  ChipSeq-mini 2.0 (http:&lt;nowiki>&#47;&#47;&lt;/nowiki>woldlab.caltech.edu/html/software, now part of the ERANGE package) was used to process the eland files and produce the processed/*.bed files.</li>
<li class="level1">  IgG files are for the control run, SREBP1 files are after fasting and refeeding. See paper for details.</li>
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<li class="level1"> <a href="http://cbcl.ics.uci.edu/public_data/SREBP1/processed/" class="urlextern" title="http://cbcl.ics.uci.edu/public_data/SREBP1/processed/" rel="nofollow">Processed Data</a></li>
<li class="level1"> <a href="http://cbcl.ics.uci.edu/public_data/SREBP1/raw_data/" class="urlextern" title="http://cbcl.ics.uci.edu/public_data/SREBP1/raw_data/" rel="nofollow">Raw Data</a></li>
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