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software:sgd [2013/02/22 16:51] wbiesing |
software:sgd [2013/02/22 17:01] (current) wbiesing |
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| - | The code is implemented with Matlab(version 2008a), which can be found here: [[https://cbcl.ics.uci.edu/sgd/SGD.tar.gz|Download SGD]]\\ | + | The code is implemented with Matlab(version 2008a) (Copyright @ [[yuanfenw@uci.edu|Yuanfeng Wang]]) |
| - | (Copyright @ [[yuanfenw@uci.edu|Yuanfeng Wang]]) | + | |
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| - | Open and run the file "main_sgd" in the fold using matlab, choose to input the datafile either using graphic interface or by specifying the file directory. | + | - [[https://cbcl.ics.uci.edu/sgd/SGD.tar.gz|Download SGD]] |
| + | - Open and run the file " main_sgd " in the fold using matlab , choose to input the datafile either using graphic interface or by specifying the file directory. <nowiki>%% | ||
| - | %%*%%%%*%% The GLPKmex package should be installed first before the run. The windows version of GLPKmex is included in the sourcecode. The Linux version of glpkmex is can be downloaded here [[http://sourceforge.net/projects/glpkmex/files/glpkmex/2.8/glpkmex-2.8-src.zip/download|GLPKmex]] . | + | %%*%%%%</nowiki><nowiki>*</nowiki> The GLPKmex package should be installed first before the run. The windows version of GLPKmex is included in the sourcecode. The Linux version of glpkmex is can be downloaded here [[http://sourceforge.net/projects/glpkmex/files/glpkmex/2.8/glpkmex-2.8-src.zip/download|GLPKmex]] . |
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| - | - Stoichiometry Matrix for reactants (Columns corresponds to species, rows corresponds to reaction types): see example file 'Rct_mat.dat' ; | + | * Stoichiometry Matrix for reactants (Columns corresponds to species, rows corresponds to reaction types): see example file 'Rct_mat.dat' ; |
| - | - Stoichiometry Matrix for product: same format as 1): see example file 'Prdt_mat.dat'; | + | * Stoichiometry Matrix for product: same format as 1): see example file 'Prdt_mat.dat'; |
| - | - time course measurement data: see example file 'data.txt'. | + | * time course measurement data: see example file 'data.txt'. |