This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision Last revision Both sides next revision | ||
software [2014/04/18 11:02] xhx [PyLOH] |
software [2015/05/08 15:06] xhx [MDOS] |
||
---|---|---|---|
Line 15: | Line 15: | ||
==== PyLOH ==== | ==== PyLOH ==== | ||
PyLOH is a tool for discovering copy number variations in cancer genomes. PyLOH is available at | PyLOH is a tool for discovering copy number variations in cancer genomes. PyLOH is available at | ||
- | [[https://github.com/uci-cbcl/PyLOH] | + | [[https://github.com/uci-cbcl/PyLOH]] |
==== TEMP ==== | ==== TEMP ==== | ||
- | TEMP is a tool for transcripts abundances estimation from heterogeneous tissue sample of RNA-Seq data. TEMP is available at [[https://github.com/uci-cbcl/TEMT]] | + | A tool for transcripts abundances estimation from heterogeneous tissue sample of RNA-Seq data, available at [[https://github.com/uci-cbcl/TEMT]] |
==== GBMCI ==== | ==== GBMCI ==== | ||
- | GBMCI is a new tool for survival analysis by direct concordance index learning using gradient boosting, available at [[https://github.com/uci-cbcl/GBMCI]] | + | GBMCI is a tool for survival analysis by direct concordance index learning using gradient boosting, available at [[https://github.com/uci-cbcl/GBMCI]] |
==== AREM ==== | ==== AREM ==== | ||
AREM is a tool for ChIP-seq analysis, and is able to discover peaks in repeat regions of the genomes. AREM is available at [[software/arem | Aligning Reads from ChIP-seq data by expectation-maximization ]] | AREM is a tool for ChIP-seq analysis, and is able to discover peaks in repeat regions of the genomes. AREM is available at [[software/arem | Aligning Reads from ChIP-seq data by expectation-maximization ]] | ||
Line 41: | Line 42: | ||
==== MDOS ==== | ==== MDOS ==== | ||
- | [[http://www.ics.uci.edu/~xhx/project/mdos | MDOS]] motif discovery using orthologous sequences (alignment independent) | ||
+ | [[http://www.ics.uci.edu/~xhx/project/mdos|MDOS]] motif discovery using orthologous sequences (alignment independent) | ||
==== iPubMed ==== | ==== iPubMed ==== |