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software [2014/04/18 11:03] xhx [PyLOH] |
software [2015/05/08 15:06] xhx [MDOS] |
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| ==== GBMCI ==== | ==== GBMCI ==== | ||
| - | GBMCI is a new tool for survival analysis by direct concordance index learning using gradient boosting, available at [[https://github.com/uci-cbcl/GBMCI]] | + | GBMCI is a tool for survival analysis by direct concordance index learning using gradient boosting, available at [[https://github.com/uci-cbcl/GBMCI]] |
| ==== AREM ==== | ==== AREM ==== | ||
| AREM is a tool for ChIP-seq analysis, and is able to discover peaks in repeat regions of the genomes. AREM is available at [[software/arem | Aligning Reads from ChIP-seq data by expectation-maximization ]] | AREM is a tool for ChIP-seq analysis, and is able to discover peaks in repeat regions of the genomes. AREM is available at [[software/arem | Aligning Reads from ChIP-seq data by expectation-maximization ]] | ||
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| ==== MDOS ==== | ==== MDOS ==== | ||
| - | [[http://www.ics.uci.edu/~xhx/project/mdos | MDOS]] motif discovery using orthologous sequences (alignment independent) | ||
| + | [[https://github.com/uci-cbcl/mdos|MDOS]] motif discovery using orthologous sequences (alignment independent) | ||
| ==== iPubMed ==== | ==== iPubMed ==== | ||