# DREME 4.12.0
#     command: dreme -p labeled_15pct_68KO12_negvspos-ext200.fa -n labeled_15pct_68KO12_negvspos-nochange-ext200.fa -oc labeled_15pct_68KO12_negvspos-vsall-noreg-dreme-s -norc -mink 4 -maxk 12 -m 20 -e 0.00000001
#   positives: 2130 from labeled_15pct_68KO12_negvspos-ext200.fa (Tue Jan 23 20:49:24 PST 2018)
#   negatives: 11710 from labeled_15pct_68KO12_negvspos-nochange-ext200.fa (Thu Jan 25 11:52:53 PST 2018)
#        host: compute-1-13.local
#        when: Thu Jan 25 11:52:56 PST 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: +

Background letter frequencies (from dataset):
A 0.303 C 0.171 G 0.189 T 0.338


MOTIF CSKGG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       CSKGG      CCMSG        745       2893   2.6e-022   3.1e-016
#            CCTGG      CCAGG        550       2073   1.1e-017   1.3e-011
#            CGTGG      CCACG        158        577   3.9e-006   4.6e+000
#            CCGGG      CCCGG        126        443   8.6e-006   1.0e+001
#            CGGGG      CCCCG        118        422   3.1e-005   3.7e+001

letter-probability matrix: alength= 4 w= 5 nsites= 1094 E= 3.1e-016
0.000000 1.000000 0.000000 0.000000
0.000000 0.752285 0.247715 0.000000
0.000000 0.000000 0.213894 0.786106
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF SGCWG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       SGCWG      CWGCS        813       3408   1.2e-016   1.4e-010
#            GGCTG      CAGCC        451       1790   2.7e-011   3.1e-005
#            GGCAG      CTGCC        396       1591   2.4e-009   2.7e-003
#            CGCTG      CAGCG        101        397   1.7e-003   2.0e+003
#            CGCAG      CTGCG         86        342   4.8e-003   5.5e+003

letter-probability matrix: alength= 4 w= 5 nsites= 1234 E= 1.4e-010
0.000000 0.158023 0.841977 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.462723 0.000000 0.000000 0.537277
0.000000 0.000000 1.000000 0.000000


MOTIF GDSCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       GDSCC      GGSHC        959       4154   5.6e-017   6.1e-011
#            GTCCC      GGGAC        258        967   1.8e-008   2.0e-002
#            GGCCC      GGGCC        211        792   4.6e-007   5.1e-001
#            GAGCC      GGCTC        273       1097   1.2e-006   1.3e+000
#            GGGCC      GGCCC        190        729   5.8e-006   6.4e+000
#            GTGCC      GGCAC        289       1283   3.5e-004   3.8e+002
#            GACCC      GGGTC        190        806   6.4e-004   7.0e+002

letter-probability matrix: alength= 4 w= 5 nsites= 1503 E= 6.1e-011
0.000000 0.000000 1.000000 0.000000
0.339987 0.000000 0.254824 0.405190
0.000000 0.452428 0.547572 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 2081.65 seconds