Information for 7-GCCAATCG (Motif 5)


Reverse Opposite:

p-value:1e-244
log p-value:-5.633e+02
Information Content per bp:1.627
Number of Target Sequences with motif4024.0
Percentage of Target Sequences with motif24.51%
Number of Background Sequences with motif4534.4
Percentage of Background Sequences with motif14.58%
Average Position of motif in Targets201.1 +/- 102.9bp
Average Position of motif in Background191.2 +/- 128.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.37
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-GCCAATCG-
AGCCAATCGG

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.90
Offset:-4
Orientation:forward strand
Alignment:----GCCAATCG
ACTAGCCAATCA

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.87
Offset:-6
Orientation:forward strand
Alignment:------GCCAATCG-
AAATGGACCAATCAG

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-GCCAATCG
TGCCAA---

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---GCCAATCG
CGTGCCAAG--

NFYA/MA0060.2/Jaspar

Match Rank:6
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---GCCAATCG-------
TGGACCAATCAGCACTCT

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---GCCAATCG
GGTGCCAAGT-

Dux/MA0611.1/Jaspar

Match Rank:8
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GCCAATCG-
-CCAATCAA

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCCAATCG
ATGCCAACC-

MSX2/MA0708.1/Jaspar

Match Rank:10
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GCCAATCG-
-CCAATTAA