Information for 4-ACGAC (Motif 6)


Reverse Opposite:

p-value:1e-232
log p-value:-5.360e+02
Information Content per bp:1.876
Number of Target Sequences with motif9804.0
Percentage of Target Sequences with motif59.71%
Number of Background Sequences with motif14625.9
Percentage of Background Sequences with motif47.01%
Average Position of motif in Targets199.8 +/- 111.0bp
Average Position of motif in Background201.0 +/- 127.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0032.1_IRC900814_1/Jaspar

Match Rank:1
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----ACGAC-------
ATTTACGACAAATAGC

PH0076.1_Hoxd11/Jaspar

Match Rank:2
Score:0.74
Offset:-8
Orientation:reverse strand
Alignment:--------ACGAC----
ANNATTTTACGACNTNA

PH0066.1_Hoxc11/Jaspar

Match Rank:3
Score:0.74
Offset:-7
Orientation:reverse strand
Alignment:-------ACGAC----
NNNTTTTACGACNTTN

PH0065.1_Hoxc10/Jaspar

Match Rank:4
Score:0.74
Offset:-7
Orientation:reverse strand
Alignment:-------ACGAC----
ANNTTTTACGACNTNN

PH0077.1_Hoxd12/Jaspar

Match Rank:5
Score:0.73
Offset:-8
Orientation:reverse strand
Alignment:--------ACGAC----
NNNATTTTACGACNNTN

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:6
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-ACGAC
CATGAC

PH0047.1_Hoxa11/Jaspar

Match Rank:7
Score:0.73
Offset:-7
Orientation:reverse strand
Alignment:-------ACGAC----
NNGTTTTACGACTTTA

HOXC11/MA0651.1/Jaspar

Match Rank:8
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----ACGAC-
NTTTTACGACC

PH0067.1_Hoxc12/Jaspar

Match Rank:9
Score:0.72
Offset:-8
Orientation:reverse strand
Alignment:--------ACGAC----
GNNNTTTTACGACCTNA

Hoxa11/MA0911.1/Jaspar

Match Rank:10
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------ACGAC-
ANTTTTACGACC