Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 16417)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 31120)	% of Background Sequences with Motif
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-873	-2.012e+03	0.0000	3702.0	22.55%	2175.3	6.99%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-847	-1.951e+03	0.0000	3942.0	24.01%	2489.8	8.00%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-838	-1.932e+03	0.0000	3995.0	24.33%	2566.9	8.25%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-799	-1.841e+03	0.0000	4139.0	25.21%	2817.3	9.06%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-783	-1.804e+03	0.0000	2544.0	15.49%	1169.6	3.76%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-693	-1.598e+03	0.0000	2055.0	12.52%	856.6	2.75%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-432	-9.951e+02	0.0000	2088.0	12.72%	1296.5	4.17%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-408	-9.412e+02	0.0000	4231.0	25.77%	4084.1	13.13%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-342	-7.889e+02	0.0000	998.0	6.08%	399.7	1.28%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-333	-7.678e+02	0.0000	1313.0	8.00%	690.8	2.22%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-326	-7.511e+02	0.0000	2203.0	13.42%	1679.5	5.40%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-301	-6.932e+02	0.0000	3886.0	23.67%	4044.9	13.00%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-286	-6.600e+02	0.0000	3823.0	23.28%	4019.1	12.92%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-286	-6.596e+02	0.0000	3813.0	23.22%	4005.4	12.88%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-270	-6.227e+02	0.0000	2988.0	18.20%	2894.0	9.30%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-269	-6.199e+02	0.0000	5436.0	33.11%	6617.4	21.27%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-257	-5.931e+02	0.0000	3156.0	19.22%	3186.8	10.24%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-233	-5.383e+02	0.0000	2452.0	14.93%	2306.4	7.41%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-228	-5.271e+02	0.0000	3454.0	21.04%	3758.8	12.08%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-214	-4.933e+02	0.0000	3549.0	21.62%	3979.6	12.79%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-201	-4.646e+02	0.0000	4312.0	26.26%	5239.0	16.84%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-196	-4.528e+02	0.0000	4556.0	27.75%	5664.0	18.21%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-196	-4.524e+02	0.0000	1828.0	11.13%	1618.7	5.20%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-193	-4.462e+02	0.0000	2465.0	15.01%	2495.4	8.02%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-190	-4.389e+02	0.0000	5730.0	34.90%	7650.0	24.59%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-153	-3.546e+02	0.0000	7039.0	42.87%	10251.1	32.95%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-152	-3.519e+02	0.0000	3919.0	23.87%	4946.5	15.90%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-144	-3.329e+02	0.0000	425.0	2.59%	170.4	0.55%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-143	-3.310e+02	0.0000	5921.0	36.06%	8379.3	26.93%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-127	-2.934e+02	0.0000	2995.0	18.24%	3662.8	11.77%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-123	-2.839e+02	0.0000	2605.0	15.87%	3086.3	9.92%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-121	-2.802e+02	0.0000	413.0	2.52%	189.2	0.61%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-118	-2.730e+02	0.0000	369.0	2.25%	156.1	0.50%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-117	-2.708e+02	0.0000	1863.0	11.35%	2013.3	6.47%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-117	-2.697e+02	0.0000	4028.0	24.53%	5409.9	17.39%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-112	-2.591e+02	0.0000	636.0	3.87%	426.1	1.37%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-99	-2.300e+02	0.0000	4818.0	29.34%	6909.0	22.21%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-93	-2.152e+02	0.0000	3303.0	20.12%	4425.6	14.23%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-92	-2.138e+02	0.0000	2242.0	13.65%	2736.2	8.80%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-91	-2.108e+02	0.0000	1878.0	11.44%	2189.2	7.04%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-88	-2.043e+02	0.0000	3298.0	20.09%	4460.5	14.34%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-87	-2.010e+02	0.0000	725.0	4.42%	600.5	1.93%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-86	-1.985e+02	0.0000	377.0	2.30%	212.3	0.68%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-84	-1.953e+02	0.0000	620.0	3.78%	481.1	1.55%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-83	-1.928e+02	0.0000	3713.0	22.61%	5199.2	16.71%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-82	-1.910e+02	0.0000	3026.0	18.43%	4067.1	13.07%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-82	-1.907e+02	0.0000	896.0	5.46%	835.6	2.69%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-82	-1.897e+02	0.0000	1993.0	12.14%	2427.4	7.80%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-82	-1.890e+02	0.0000	2969.0	18.08%	3982.3	12.80%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-80	-1.862e+02	0.0000	1243.0	7.57%	1321.8	4.25%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-78	-1.811e+02	0.0000	5740.0	34.96%	8773.4	28.20%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-78	-1.810e+02	0.0000	5707.0	34.76%	8715.5	28.02%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-77	-1.788e+02	0.0000	2649.0	16.13%	3502.8	11.26%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-77	-1.775e+02	0.0000	5795.0	35.29%	8892.9	28.59%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-74	-1.707e+02	0.0000	2040.0	12.42%	2562.1	8.24%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-71	-1.654e+02	0.0000	2593.0	15.79%	3464.1	11.14%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-70	-1.622e+02	0.0000	2704.0	16.47%	3658.2	11.76%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-69	-1.605e+02	0.0000	2626.0	15.99%	3538.9	11.38%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-69	-1.601e+02	0.0000	3669.0	22.35%	5278.5	16.97%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-68	-1.571e+02	0.0000	4177.0	25.44%	6164.6	19.82%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-67	-1.546e+02	0.0000	3007.0	18.31%	4191.6	13.47%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-65	-1.502e+02	0.0000	4470.0	27.22%	6710.7	21.57%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-62	-1.448e+02	0.0000	2552.0	15.54%	3483.4	11.20%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-62	-1.429e+02	0.0000	4539.0	27.64%	6873.9	22.10%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-61	-1.421e+02	0.0000	4961.0	30.21%	7620.4	24.50%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-61	-1.420e+02	0.0000	4858.0	29.59%	7439.5	23.91%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-61	-1.415e+02	0.0000	2345.0	14.28%	3159.5	10.16%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-58	-1.351e+02	0.0000	4779.0	29.11%	7342.4	23.60%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-58	-1.350e+02	0.0000	2698.0	16.43%	3769.0	12.12%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-57	-1.331e+02	0.0000	941.0	5.73%	1016.2	3.27%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-57	-1.317e+02	0.0000	641.0	3.90%	605.0	1.94%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-56	-1.300e+02	0.0000	7910.0	48.18%	13071.1	42.02%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-56	-1.298e+02	0.0000	3649.0	22.22%	5403.8	17.37%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-52	-1.219e+02	0.0000	2768.0	16.86%	3948.3	12.69%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-52	-1.201e+02	0.0000	4024.0	24.51%	6109.2	19.64%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-51	-1.189e+02	0.0000	2327.0	14.17%	3229.4	10.38%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-51	-1.186e+02	0.0000	2420.0	14.74%	3384.7	10.88%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-50	-1.168e+02	0.0000	6174.0	37.60%	9969.1	32.05%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-47	-1.083e+02	0.0000	5604.0	34.13%	8998.3	28.92%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-46	-1.060e+02	0.0000	3036.0	18.49%	4487.1	14.42%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-45	-1.044e+02	0.0000	3963.0	24.14%	6102.5	19.62%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-44	-1.033e+02	0.0000	10457.0	63.69%	18133.3	58.29%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-40	-9.405e+01	0.0000	5048.0	30.74%	8104.3	26.05%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-40	-9.345e+01	0.0000	2581.0	15.72%	3784.5	12.17%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-40	-9.212e+01	0.0000	2392.0	14.57%	3472.5	11.16%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-39	-9.202e+01	0.0000	1209.0	7.36%	1541.1	4.95%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-39	-9.169e+01	0.0000	1022.0	6.22%	1253.6	4.03%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-38	-8.786e+01	0.0000	2602.0	15.85%	3852.4	12.38%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-36	-8.437e+01	0.0000	1835.0	11.18%	2583.8	8.31%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-35	-8.264e+01	0.0000	2978.0	18.14%	4530.0	14.56%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-35	-8.263e+01	0.0000	1513.0	9.21%	2064.2	6.64%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-35	-8.143e+01	0.0000	1196.0	7.28%	1561.1	5.02%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-34	-8.055e+01	0.0000	912.0	5.55%	1122.8	3.61%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-32	-7.438e+01	0.0000	6928.0	42.20%	11714.6	37.66%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-31	-7.250e+01	0.0000	1689.0	10.29%	2402.1	7.72%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-29	-6.776e+01	0.0000	1210.0	7.37%	1641.6	5.28%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-28	-6.544e+01	0.0000	1235.0	7.52%	1692.2	5.44%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-27	-6.333e+01	0.0000	321.0	1.96%	309.0	0.99%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-27	-6.322e+01	0.0000	695.0	4.23%	849.1	2.73%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-27	-6.286e+01	0.0000	1039.0	6.33%	1388.8	4.46%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-26	-6.169e+01	0.0000	493.0	3.00%	553.5	1.78%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-26	-6.129e+01	0.0000	1115.0	6.79%	1517.2	4.88%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-26	-6.044e+01	0.0000	2928.0	17.83%	4601.3	14.79%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-26	-6.023e+01	0.0000	2886.0	17.58%	4529.0	14.56%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-25	-5.962e+01	0.0000	940.0	5.73%	1244.5	4.00%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-25	-5.867e+01	0.0000	164.0	1.00%	120.3	0.39%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-24	-5.665e+01	0.0000	382.0	2.33%	407.6	1.31%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-23	-5.428e+01	0.0000	7539.0	45.92%	13068.3	42.01%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-23	-5.412e+01	0.0000	3926.0	23.91%	6428.3	20.66%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-22	-5.227e+01	0.0000	410.0	2.50%	458.8	1.47%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-22	-5.192e+01	0.0000	419.0	2.55%	472.9	1.52%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-22	-5.155e+01	0.0000	2096.0	12.77%	3220.9	10.35%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-21	-4.892e+01	0.0000	770.0	4.69%	1019.3	3.28%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-20	-4.814e+01	0.0000	420.0	2.56%	484.2	1.56%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-19	-4.421e+01	0.0000	1652.0	10.06%	2509.9	8.07%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-18	-4.356e+01	0.0000	1309.0	7.97%	1931.4	6.21%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-18	-4.308e+01	0.0000	1498.0	9.12%	2254.6	7.25%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-17	-4.131e+01	0.0000	3732.0	22.73%	6208.9	19.96%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-17	-4.074e+01	0.0000	730.0	4.45%	991.7	3.19%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-16	-3.774e+01	0.0000	725.0	4.42%	997.6	3.21%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-15	-3.629e+01	0.0000	691.0	4.21%	949.4	3.05%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-15	-3.619e+01	0.0000	1956.0	11.91%	3097.6	9.96%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-15	-3.563e+01	0.0000	1837.0	11.19%	2894.4	9.30%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-14	-3.422e+01	0.0000	3225.0	19.64%	5372.1	17.27%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-14	-3.408e+01	0.0000	1036.0	6.31%	1531.1	4.92%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-14	-3.396e+01	0.0000	2015.0	12.27%	3220.4	10.35%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-14	-3.384e+01	0.0000	3732.0	22.73%	6293.3	20.23%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-13	-3.208e+01	0.0000	10743.0	65.43%	19462.1	62.56%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-13	-3.198e+01	0.0000	858.0	5.23%	1247.0	4.01%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-13	-3.167e+01	0.0000	2896.0	17.64%	4809.1	15.46%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-13	-3.038e+01	0.0000	1521.0	9.26%	2388.2	7.68%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-13	-3.038e+01	0.0000	601.0	3.66%	832.8	2.68%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-12	-2.988e+01	0.0000	4256.0	25.92%	7299.9	23.47%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-12	-2.986e+01	0.0000	365.0	2.22%	460.3	1.48%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-12	-2.856e+01	0.0000	842.0	5.13%	1240.0	3.99%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-11	-2.733e+01	0.0000	4104.0	25.00%	7056.4	22.68%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-11	-2.716e+01	0.0000	238.0	1.45%	277.1	0.89%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-11	-2.649e+01	0.0000	3438.0	20.94%	5852.4	18.81%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-11	-2.632e+01	0.0000	8088.0	49.26%	14493.2	46.59%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-11	-2.548e+01	0.0000	256.0	1.56%	309.4	0.99%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-10	-2.532e+01	0.0000	245.0	1.49%	293.3	0.94%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-10	-2.528e+01	0.0000	1159.0	7.06%	1803.8	5.80%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-10	-2.525e+01	0.0000	1801.0	10.97%	2926.8	9.41%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-10	-2.473e+01	0.0000	583.0	3.55%	832.8	2.68%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-10	-2.468e+01	0.0000	581.0	3.54%	829.5	2.67%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-10	-2.460e+01	0.0000	2267.0	13.81%	3762.2	12.09%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-10	-2.406e+01	0.0000	334.0	2.03%	434.5	1.40%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-10	-2.396e+01	0.0000	604.0	3.68%	871.8	2.80%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-9	-2.073e+01	0.0000	2540.0	15.47%	4301.2	13.83%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-8	-2.053e+01	0.0000	300.0	1.83%	395.2	1.27%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-8	-2.029e+01	0.0000	3385.0	20.62%	5845.0	18.79%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-8	-1.946e+01	0.0000	1213.0	7.39%	1948.9	6.26%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-8	-1.928e+01	0.0000	2820.0	17.18%	4829.9	15.53%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-8	-1.889e+01	0.0000	437.0	2.66%	624.7	2.01%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-8	-1.849e+01	0.0000	1244.0	7.58%	2012.1	6.47%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-7	-1.793e+01	0.0000	421.0	2.56%	603.7	1.94%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-7	-1.650e+01	0.0000	1542.0	9.39%	2562.1	8.24%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-7	-1.642e+01	0.0000	1858.0	11.32%	3129.5	10.06%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-7	-1.620e+01	0.0000	2657.0	16.18%	4579.3	14.72%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-6	-1.591e+01	0.0000	4571.0	27.84%	8106.9	26.06%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-6	-1.558e+01	0.0000	238.0	1.45%	318.2	1.02%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-6	-1.497e+01	0.0000	1969.0	11.99%	3349.5	10.77%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-6	-1.475e+01	0.0000	1965.0	11.97%	3345.8	10.75%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-6	-1.473e+01	0.0000	333.0	2.03%	476.1	1.53%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-6	-1.384e+01	0.0000	4469.0	27.22%	7959.2	25.58%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-5	-1.359e+01	0.0000	352.0	2.14%	514.8	1.65%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-5	-1.330e+01	0.0000	1591.0	9.69%	2691.2	8.65%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-5	-1.293e+01	0.0000	2015.0	12.27%	3463.3	11.13%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-5	-1.277e+01	0.0000	1454.0	8.86%	2452.5	7.88%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-5	-1.270e+01	0.0000	7381.0	44.95%	13439.6	43.20%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-5	-1.256e+01	0.0000	4633.0	28.22%	8292.3	26.66%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-5	-1.195e+01	0.0000	2204.0	13.42%	3823.3	12.29%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-4	-1.079e+01	0.0000	3197.0	19.47%	5669.2	18.22%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-4	-1.042e+01	0.0001	4702.0	28.64%	8472.8	27.24%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-4	-1.035e+01	0.0001	494.0	3.01%	779.6	2.51%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-4	-9.429e+00	0.0001	286.0	1.74%	430.7	1.38%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-3	-9.167e+00	0.0002	703.0	4.28%	1157.6	3.72%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-3	-7.759e+00	0.0008	2966.0	18.06%	5312.0	17.08%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-3	-7.650e+00	0.0008	98.0	0.60%	130.4	0.42%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-3	-7.588e+00	0.0009	841.0	5.12%	1423.3	4.58%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-3	-7.588e+00	0.0009	10503.0	63.97%	19514.9	62.73%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-2	-6.853e+00	0.0019	248.0	1.51%	384.4	1.24%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-2	-6.831e+00	0.0019	541.0	3.29%	897.5	2.89%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-2	-6.548e+00	0.0025	404.0	2.46%	658.8	2.12%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-2	-6.508e+00	0.0026	536.0	3.26%	892.4	2.87%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-2	-6.398e+00	0.0029	2371.0	14.44%	4245.9	13.65%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-2	-6.160e+00	0.0036	3406.0	20.74%	6174.1	19.85%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-2	-6.106e+00	0.0038	274.0	1.67%	435.5	1.40%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-2	-5.822e+00	0.0050	986.0	6.01%	1713.2	5.51%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-2	-5.552e+00	0.0065	1505.0	9.17%	2668.8	8.58%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-2	-5.246e+00	0.0088	894.0	5.44%	1556.2	5.00%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-2	-4.971e+00	0.0115	655.0	3.99%	1127.8	3.63%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-2	-4.713e+00	0.0148	748.0	4.56%	1301.0	4.18%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-2	-4.693e+00	0.0151	6618.0	40.31%	12258.3	39.40%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-4.455e+00	0.0190	1196.0	7.28%	2125.3	6.83%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-4.080e+00	0.0275	735.0	4.48%	1288.2	4.14%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-4.075e+00	0.0275	1190.0	7.25%	2123.5	6.83%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-3.769e+00	0.0372	5177.0	31.53%	9584.9	30.81%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-3.230e+00	0.0634	370.0	2.25%	639.7	2.06%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-3.200e+00	0.0650	4070.0	24.79%	7529.3	24.20%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-2.959e+00	0.0823	5387.0	32.81%	10021.1	32.21%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-2.875e+00	0.0891	1405.0	8.56%	2555.3	8.21%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-2.831e+00	0.0926	2234.0	13.61%	4103.5	13.19%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-1	-2.791e+00	0.0960	238.0	1.45%	407.9	1.31%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-2.743e+00	0.1002	61.0	0.37%	95.0	0.31%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-2.608e+00	0.1141	4252.0	25.90%	7902.6	25.40%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-2.425e+00	0.1363	58.0	0.35%	91.5	0.29%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-2.324e+00	0.1502	36.0	0.22%	54.4	0.18%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.312e+00	0.1505	211.0	1.29%	365.9	1.18%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.312e+00	0.1505	211.0	1.29%	365.9	1.18%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.161e+00	0.1742	556.0	3.39%	1001.7	3.22%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.100e+00	0.1843	461.0	2.81%	827.4	2.66%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.063e+00	0.1902	902.0	5.49%	1646.2	5.29%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-2.016e+00	0.1985	186.0	1.13%	324.4	1.04%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.731e+00	0.2628	1317.0	8.02%	2434.7	7.83%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.699e+00	0.2700	2716.0	16.54%	5064.1	16.28%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.546e+00	0.3133	229.0	1.39%	411.7	1.32%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.533e+00	0.3159	277.0	1.69%	500.7	1.61%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.528e+00	0.3160	298.0	1.81%	539.6	1.73%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.518e+00	0.3179	76.0	0.46%	131.8	0.42%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.478e+00	0.3292	320.0	1.95%	581.4	1.87%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.423e+00	0.3461	8811.0	53.66%	16608.0	53.39%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.410e+00	0.3491	4017.0	24.47%	7538.2	24.23%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.386e+00	0.3562	514.0	3.13%	945.8	3.04%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.311e+00	0.3820	396.0	2.41%	727.6	2.34%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.281e+00	0.3921	1241.0	7.56%	2313.4	7.44%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.210e+00	0.4192	530.0	3.23%	981.1	3.15%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.075e+00	0.4775	25.0	0.15%	43.8	0.14%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.058e+00	0.4835	495.0	3.01%	921.7	2.96%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-9.765e-01	0.5224	2606.0	15.87%	4909.6	15.78%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-9.209e-01	0.5498	2808.0	17.10%	5296.6	17.03%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-9.091e-01	0.5540	2020.0	12.30%	3807.2	12.24%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-8.754e-01	0.5705	2147.0	13.08%	4050.4	13.02%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-8.323e-01	0.5931	410.0	2.50%	770.9	2.48%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-8.194e-01	0.5982	397.0	2.42%	746.7	2.40%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-7.401e-01	0.6448	253.0	1.54%	477.7	1.54%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-7.131e-01	0.6597	638.0	3.89%	1207.1	3.88%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-6.893e-01	0.6728	166.0	1.01%	314.5	1.01%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-6.638e-01	0.6873	36.0	0.22%	68.9	0.22%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.518e-01	0.6926	1126.0	6.86%	2136.1	6.87%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-6.208e-01	0.7115	1034.0	6.30%	1964.7	6.32%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-6.113e-01	0.7153	846.0	5.15%	1608.2	5.17%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-5.246e-01	0.7768	2933.0	17.86%	5578.9	17.93%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-5.234e-01	0.7768	2131.0	12.98%	4056.2	13.04%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-5.050e-01	0.7858	1064.0	6.48%	2031.5	6.53%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-4.973e-01	0.7886	196.0	1.19%	378.7	1.22%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-4.930e-01	0.7889	11.0	0.07%	22.6	0.07%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-4.692e-01	0.8046	555.0	3.38%	1065.3	3.42%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.352e-01	0.8291	1825.0	11.12%	3486.4	11.21%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-4.002e-01	0.8552	52.0	0.32%	104.6	0.34%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-3.948e-01	0.8564	4766.0	29.03%	9079.4	29.19%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-3.709e-01	0.8736	249.0	1.52%	486.2	1.56%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-3.630e-01	0.8770	4212.0	25.65%	8034.1	25.83%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-3.566e-01	0.8792	6113.0	37.23%	11643.4	37.43%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.562e-01	0.8792	5765.0	35.11%	10983.7	35.31%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.525e-01	0.8792	329.0	2.00%	641.5	2.06%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-3.487e-01	0.8792	23.0	0.14%	49.0	0.16%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-3.375e-01	0.8822	1828.0	11.13%	3506.4	11.27%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.796e-01	0.9313	1178.0	7.17%	2275.6	7.31%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.358e-01	0.9692	1410.0	8.59%	2726.9	8.77%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.208e-01	0.9801	493.0	3.00%	969.9	3.12%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.136e-01	0.9833	2231.0	13.59%	4299.5	13.82%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.015e-01	0.9916	901.0	5.49%	1757.1	5.65%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.924e-01	0.9969	2048.0	12.47%	3955.5	12.72%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.865e-01	0.9990	2895.0	17.63%	5573.7	17.92%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.735e-01	1.0000	419.0	2.55%	832.9	2.68%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.580e-01	1.0000	1023.0	6.23%	2001.0	6.43%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.534e-01	1.0000	305.0	1.86%	613.2	1.97%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.387e-01	1.0000	11.0	0.07%	28.8	0.09%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.309e-01	1.0000	1214.0	7.39%	2374.1	7.63%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.024e-01	1.0000	25.0	0.15%	60.9	0.20%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-9.191e-02	1.0000	1692.0	10.31%	3306.1	10.63%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-6.956e-02	1.0000	1138.0	6.93%	2249.2	7.23%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.963e-02	1.0000	65.0	0.40%	148.9	0.48%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-5.369e-02	1.0000	3031.0	18.46%	5896.8	18.96%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-5.239e-02	1.0000	1814.0	11.05%	3562.3	11.45%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-4.192e-02	1.0000	774.0	4.71%	1557.4	5.01%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-3.861e-02	1.0000	794.0	4.84%	1598.3	5.14%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-3.786e-02	1.0000	233.0	1.42%	495.0	1.59%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-3.465e-02	1.0000	21.0	0.13%	57.6	0.19%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.171e-02	1.0000	956.0	5.82%	1928.7	6.20%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.857e-02	1.0000	2670.0	16.26%	5247.8	16.87%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.257e-02	1.0000	906.0	5.52%	1843.8	5.93%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-9.355e-03	1.0000	193.0	1.18%	430.9	1.39%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-9.105e-03	1.0000	395.0	2.41%	839.4	2.70%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-6.590e-03	1.0000	6641.0	40.45%	12878.5	41.40%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-4.791e-03	1.0000	1994.0	12.14%	3986.8	12.82%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.607e-03	1.0000	567.0	3.45%	1197.8	3.85%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.907e-03	1.0000	298.0	1.81%	658.8	2.12%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.610e-03	1.0000	523.0	3.19%	1122.0	3.61%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-7.690e-04	1.0000	973.0	5.93%	2030.9	6.53%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.400e-04	1.0000	1039.0	6.33%	2167.5	6.97%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-3.550e-04	1.0000	8632.0	52.57%	16764.5	53.89%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-3.390e-04	1.0000	4281.0	26.07%	8476.1	27.25%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.100e-05	1.0000	6431.0	39.17%	12671.5	40.73%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.200e-05	1.0000	7572.0	46.12%	14858.4	47.76%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-7.000e-06	1.0000	5994.0	36.51%	11868.7	38.15%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-4.000e-06	1.0000	404.0	2.46%	946.6	3.04%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.000e-06	1.0000	36.0	0.22%	136.3	0.44%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.000e-06	1.0000	526.0	3.20%	1214.4	3.90%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-0.000e+00	1.0000	627.0	3.82%	1432.0	4.60%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-0.000e+00	1.0000	4448.0	27.09%	8979.7	28.86%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-0.000e+00	1.0000	61.0	0.37%	211.8	0.68%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-0.000e+00	1.0000	2643.0	16.10%	5491.6	17.65%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-0.000e+00	1.0000	5625.0	34.26%	11407.3	36.67%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-0.000e+00	1.0000	231.0	1.41%	657.5	2.11%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-0.000e+00	1.0000	428.0	2.61%	1152.1	3.70%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	6195.0	37.73%	12769.1	41.05%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	4188.0	25.51%	9522.3	30.61%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	3981.0	24.25%	9475.3	30.46%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	3842.0	23.40%	8271.2	26.59%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	0.000e+00	1.0000	5452.0	33.21%	11715.3	37.66%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	0.000e+00	1.0000	1147.0	6.99%	2733.4	8.79%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	283.0	1.72%	913.8	2.94%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	1252.0	7.63%	3800.8	12.22%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	0.000e+00	1.0000	2445.0	14.89%	5865.3	18.85%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	1436.0	8.75%	4221.9	13.57%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	0.000e+00	1.0000	7049.0	42.93%	14514.7	46.66%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	1318.0	8.03%	3198.8	10.28%