Information for 6-GACC (Motif 14)


Reverse Opposite:

p-value:1e-1
log p-value:-3.813e+00
Information Content per bp:1.945
Number of Target Sequences with motif4682.0
Percentage of Target Sequences with motif99.91%
Number of Background Sequences with motif40299.6
Percentage of Background Sequences with motif99.77%
Average Position of motif in Targets1081.3 +/- 508.3bp
Average Position of motif in Background1066.9 +/- 596.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)9.57
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-GACC-
TGACCT

RORA/MA0071.1/Jaspar

Match Rank:2
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GACC-----
TGACCTTGAT

NR2F1/MA0017.2/Jaspar

Match Rank:3
Score:0.78
Offset:-5
Orientation:reverse strand
Alignment:-----GACC----
CNNTTGACCTTTG

PB0153.1_Nr2f2_2/Jaspar

Match Rank:4
Score:0.78
Offset:-5
Orientation:reverse strand
Alignment:-----GACC-------
NNNNTGACCCGGCGCG

PB0057.1_Rxra_1/Jaspar

Match Rank:5
Score:0.77
Offset:-6
Orientation:forward strand
Alignment:------GACC-------
TGTCGTGACCCCTTAAT

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----GACC-------
NNCNTGACCCCGCTCT

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----GACC-------
NNNNTGACCTTTNNNN

PB0030.1_Hnf4a_1/Jaspar

Match Rank:8
Score:0.75
Offset:-6
Orientation:reverse strand
Alignment:------GACC-------
NNANTTGACCCCTNNNN

PB0118.1_Esrra_2/Jaspar

Match Rank:9
Score:0.75
Offset:-6
Orientation:reverse strand
Alignment:------GACC-------
NNNNTTGACCCCTNNNN

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:10
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----GACC--------
CATAAGACCACCATTAC