Information for 7-AGTA (Motif 15)


Reverse Opposite:

p-value:1e-1
log p-value:-3.473e+00
Information Content per bp:1.530
Number of Target Sequences with motif4610.0
Percentage of Target Sequences with motif98.38%
Number of Background Sequences with motif39573.0
Percentage of Background Sequences with motif97.97%
Average Position of motif in Targets1011.1 +/- 626.0bp
Average Position of motif in Background999.8 +/- 714.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)6.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:1
Score:0.74
Offset:-6
Orientation:forward strand
Alignment:------AGTA-------
ACTCCAAGTACTTGGAA

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---AGTA---
TTAAGTGCTT

PB0050.1_Osr1_1/Jaspar

Match Rank:3
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------AGTA------
ATTTACAGTAGCAAAA

NKX2-8/MA0673.1/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----AGTA-
NTCAAGTGG

PH0117.1_Nkx3-1/Jaspar

Match Rank:5
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------AGTA-------
NATTTAAGTACTTANNA

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGTA---
TTRAGTGSYK

PB0051.1_Osr2_1/Jaspar

Match Rank:7
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------AGTA------
ATGTACAGTAGCAAAG

PB0154.1_Osr1_2/Jaspar

Match Rank:8
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AGTA------
NNNTTAGGTAGCNTNT

PB0155.1_Osr2_2/Jaspar

Match Rank:9
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------AGTA------
NNTGTAGGTAGCANNT

PH0116.1_Nkx2-9/Jaspar

Match Rank:10
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------AGTA-------
NATTTAAGTACTTNAAA