Information for 4-CCAATCGG (Motif 3)


Reverse Opposite:

p-value:1e-35
log p-value:-8.089e+01
Information Content per bp:1.803
Number of Target Sequences with motif2057.0
Percentage of Target Sequences with motif43.90%
Number of Background Sequences with motif13965.5
Percentage of Background Sequences with motif34.57%
Average Position of motif in Targets962.0 +/- 405.0bp
Average Position of motif in Background970.4 +/- 529.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.55
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--CCAATCGG
AGCCAATCGG

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.88
Offset:-7
Orientation:forward strand
Alignment:-------CCAATCGG
AAATGGACCAATCAG

NFYA/MA0060.2/Jaspar

Match Rank:3
Score:0.82
Offset:-4
Orientation:reverse strand
Alignment:----CCAATCGG------
TGGACCAATCAGCACTCT

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.80
Offset:-5
Orientation:forward strand
Alignment:-----CCAATCGG
ACTAGCCAATCA-

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CCAATCGG
CCAATCAA

PH0089.1_Isx/Jaspar

Match Rank:6
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CCAATCGG----
ACTCCTAATTAGTCGT

PB0132.1_Hbp1_2/Jaspar

Match Rank:7
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----CCAATCGG----
NNTNNACAATGGGANNN

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CCAATCGG
TGCCAA----

VENTX/MA0724.1/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCAATCGG-
CTAATCGNT

Gfi1/MA0038.1/Jaspar

Match Rank:10
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCAATCGG--
CAAATCACTG