Information for 6-CCGACAT (Motif 5)


Reverse Opposite:

p-value:1e-32
log p-value:-7.580e+01
Information Content per bp:1.947
Number of Target Sequences with motif2973.0
Percentage of Target Sequences with motif63.44%
Number of Background Sequences with motif21919.5
Percentage of Background Sequences with motif54.27%
Average Position of motif in Targets1066.1 +/- 429.8bp
Average Position of motif in Background1075.4 +/- 554.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.59
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CCGACAT--
GTCCGCCATTA

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------CCGACAT----
CAAATCCAGACATCACA

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCGACAT----
GCCGCCATCTTG

ZBED1/MA0749.1/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CCGACAT-
CTATCGCGACATA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CCGACAT
CCAGACAG

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCGACAT
TTGACAG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CCGACAT--
CCAGACRSVB

PB0164.1_Smad3_2/Jaspar

Match Rank:8
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CCGACAT----
TACGCCCCGCCACTCTG

Atf3/MA0605.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCGACAT-
ACGTCATC

GCM2/MA0767.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCGACAT-
TACCCGCATN