Information for 5-GTCGTA (Motif 6)


Reverse Opposite:

p-value:1e-32
log p-value:-7.534e+01
Information Content per bp:1.935
Number of Target Sequences with motif3625.0
Percentage of Target Sequences with motif77.36%
Number of Background Sequences with motif27894.5
Percentage of Background Sequences with motif69.06%
Average Position of motif in Targets1052.2 +/- 500.1bp
Average Position of motif in Background1059.5 +/- 621.0bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.41
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0077.1_Hoxd12/Jaspar

Match Rank:1
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----GTCGTA-------
CAAGGTCGTAAAATCTT

PH0067.1_Hoxc12/Jaspar

Match Rank:2
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----GTCGTA-------
TTAGGTCGTAAAATTTC

PH0066.1_Hoxc11/Jaspar

Match Rank:3
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----GTCGTA------
TAAAGTCGTAAAATAG

PH0065.1_Hoxc10/Jaspar

Match Rank:4
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----GTCGTA------
TAAAGTCGTAAAACGT

PH0076.1_Hoxd11/Jaspar

Match Rank:5
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----GTCGTA-------
TAAGGTCGTAAAATCCT

HOXC12/MA0906.1/Jaspar

Match Rank:6
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-GTCGTA----
GGTCGTAAAAA

PB0032.1_IRC900814_1/Jaspar

Match Rank:7
Score:0.78
Offset:-7
Orientation:reverse strand
Alignment:-------GTCGTA---
GNNATTTGTCGTAANN

PH0047.1_Hoxa11/Jaspar

Match Rank:8
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----GTCGTA------
TAAAGTCGTAAAACAT

HOXD12/MA0873.1/Jaspar

Match Rank:9
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-GTCGTA----
AGTCGTAAAAA

HOXC11/MA0651.1/Jaspar

Match Rank:10
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GTCGTA----
GGTCGTAAAAT