Information for 13-CGACGAT (Motif 9)


Reverse Opposite:

p-value:1e-23
log p-value:-5.469e+01
Information Content per bp:1.749
Number of Target Sequences with motif2225.0
Percentage of Target Sequences with motif47.48%
Number of Background Sequences with motif16050.2
Percentage of Background Sequences with motif39.74%
Average Position of motif in Targets1063.1 +/- 507.1bp
Average Position of motif in Background1060.8 +/- 613.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CGACGAT---
-GACAATGNN

PB0179.1_Sp100_2/Jaspar

Match Rank:2
Score:0.64
Offset:-8
Orientation:reverse strand
Alignment:--------CGACGAT
NNTTTANNCGACGNA

PB0032.1_IRC900814_1/Jaspar

Match Rank:3
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CGACGAT----
ATTTACGACAAATAGC

PB0108.1_Atf1_2/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGACGAT----
GAATGACGAATAAC

PH0044.1_Homez/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CGACGAT-----
NNTAAAAACGATGTTNT

PB0070.1_Sox30_1/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CGACGAT------
AATGAACAATGGAATT

PB0175.1_Sox4_2/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CGACGAT------
TNCNNAACAATTTTTNC

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CGACGAT--
RNAACAATGG

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CGACGAT-----
TCACGGAACAATAGGTG

PB0127.1_Gata6_2/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CGACGAT---------
GCGGCGATATCGCAGCG