Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 4686)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 40392)	% of Background Sequences with Motif
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-48	-1.108e+02	0.0000	3242.0	69.18%	23524.5	58.24%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-47	-1.097e+02	0.0000	2166.0	46.22%	14237.2	35.25%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-47	-1.088e+02	0.0000	3190.0	68.08%	23092.1	57.17%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-39	-9.103e+01	0.0000	2935.0	62.63%	21207.2	52.50%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-31	-7.252e+01	0.0000	2577.0	54.99%	18547.2	45.92%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-29	-6.907e+01	0.0000	3778.0	80.62%	29507.2	73.05%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-27	-6.415e+01	0.0000	1256.0	26.80%	7965.9	19.72%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-24	-5.612e+01	0.0000	629.0	13.42%	3473.3	8.60%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-23	-5.517e+01	0.0000	2638.0	56.30%	19561.8	48.43%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-23	-5.371e+01	0.0000	3231.0	68.95%	24846.1	61.51%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-23	-5.332e+01	0.0000	717.0	15.30%	4149.0	10.27%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-22	-5.110e+01	0.0000	448.0	9.56%	2300.3	5.69%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-21	-4.982e+01	0.0000	1921.0	40.99%	13659.6	33.82%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-20	-4.823e+01	0.0000	3099.0	66.13%	23832.1	59.00%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-20	-4.757e+01	0.0000	3804.0	81.18%	30328.5	75.08%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-18	-4.325e+01	0.0000	650.0	13.87%	3849.7	9.53%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-17	-4.114e+01	0.0000	3291.0	70.23%	25792.3	63.85%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-15	-3.675e+01	0.0000	1364.0	29.11%	9521.6	23.57%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-15	-3.550e+01	0.0000	2410.0	51.43%	18261.5	45.21%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-14	-3.390e+01	0.0000	1033.0	22.04%	6979.4	17.28%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-14	-3.381e+01	0.0000	2914.0	62.19%	22702.9	56.21%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-13	-3.149e+01	0.0000	852.0	18.18%	5638.6	13.96%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-11	-2.584e+01	0.0000	4109.0	87.69%	33920.4	83.98%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-10	-2.484e+01	0.0000	3262.0	69.61%	26162.2	64.77%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-10	-2.365e+01	0.0000	2096.0	44.73%	16079.9	39.81%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-9	-2.169e+01	0.0000	3781.0	80.69%	31003.6	76.76%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-8	-2.038e+01	0.0000	4237.0	90.42%	35339.9	87.49%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-8	-1.912e+01	0.0000	4395.0	93.79%	36927.2	91.42%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-8	-1.862e+01	0.0000	1181.0	25.20%	8698.6	21.54%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-8	-1.845e+01	0.0000	3310.0	70.64%	26894.8	66.58%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-7	-1.678e+01	0.0000	2256.0	48.14%	17790.3	44.04%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-7	-1.631e+01	0.0000	1293.0	27.59%	9722.5	24.07%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-6	-1.560e+01	0.0000	1186.0	25.31%	8877.5	21.98%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-6	-1.557e+01	0.0000	3033.0	64.72%	24599.1	60.90%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-6	-1.521e+01	0.0000	2004.0	42.77%	15732.6	38.95%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-5	-1.358e+01	0.0000	2818.0	60.14%	22837.7	56.54%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-5	-1.350e+01	0.0000	3539.0	75.52%	29210.8	72.32%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-5	-1.212e+01	0.0000	561.0	11.97%	3987.4	9.87%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-5	-1.203e+01	0.0000	4462.0	95.22%	37819.0	93.63%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-4	-1.133e+01	0.0001	1560.0	33.29%	12221.2	30.26%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-4	-1.059e+01	0.0002	3663.0	78.17%	30497.5	75.50%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-4	-1.054e+01	0.0002	3773.0	80.52%	31489.3	77.96%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-4	-9.699e+00	0.0005	1963.0	41.89%	15743.8	38.98%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-4	-9.622e+00	0.0005	4366.0	93.17%	36988.4	91.57%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-4	-9.293e+00	0.0007	1579.0	33.70%	12519.4	30.99%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-3	-8.833e+00	0.0010	483.0	10.31%	3505.8	8.68%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-3	-8.785e+00	0.0010	415.0	8.86%	2967.1	7.35%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-3	-8.248e+00	0.0017	2089.0	44.58%	16932.4	41.92%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-3	-8.212e+00	0.0018	4111.0	87.73%	34695.1	85.89%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-3	-8.108e+00	0.0019	182.0	3.88%	1185.9	2.94%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-3	-7.829e+00	0.0025	3722.0	79.43%	31212.8	77.27%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-3	-7.462e+00	0.0035	3167.0	67.58%	26334.1	65.20%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-3	-7.410e+00	0.0036	3795.0	80.99%	31895.5	78.96%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-3	-7.311e+00	0.0039	3541.0	75.57%	29642.4	73.39%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-3	-7.233e+00	0.0042	3373.0	71.98%	28164.5	69.73%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-2	-6.902e+00	0.0057	4170.0	88.99%	35313.1	87.42%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-2	-6.884e+00	0.0057	1324.0	28.25%	10556.8	26.14%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-2	-6.860e+00	0.0058	3658.0	78.06%	30716.1	76.04%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-2	-6.805e+00	0.0060	1318.0	28.13%	10512.3	26.03%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-2	-6.437e+00	0.0085	1124.0	23.99%	8914.0	22.07%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-2	-6.404e+00	0.0087	462.0	9.86%	3454.6	8.55%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-2	-6.248e+00	0.0100	458.0	9.77%	3430.7	8.49%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-2	-6.146e+00	0.0108	916.0	19.55%	7201.3	17.83%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-2	-5.953e+00	0.0129	1602.0	34.19%	12986.9	32.15%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-2	-5.900e+00	0.0134	3328.0	71.02%	27886.8	69.04%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-5.808e+00	0.0145	4564.0	97.40%	39039.1	96.65%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-2	-5.742e+00	0.0153	992.0	21.17%	7866.0	19.47%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-2	-5.709e+00	0.0156	2261.0	48.25%	18640.8	46.15%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-2	-4.944e+00	0.0330	1466.0	31.28%	11931.1	29.54%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-2	-4.862e+00	0.0353	1790.0	38.20%	14696.1	36.38%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-4.818e+00	0.0363	1416.0	30.22%	11520.5	28.52%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-2	-4.766e+00	0.0377	444.0	9.48%	3402.4	8.42%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-2	-4.707e+00	0.0395	2296.0	49.00%	19050.4	47.16%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-2	-4.668e+00	0.0405	650.0	13.87%	5105.5	12.64%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-2	-4.648e+00	0.0407	1379.0	29.43%	11224.1	27.79%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-2	-4.638e+00	0.0407	2553.0	54.48%	21274.6	52.67%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-4.507e+00	0.0457	1748.0	37.30%	14377.8	35.60%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-4.463e+00	0.0472	3296.0	70.34%	27752.3	68.71%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-4.178e+00	0.0619	1474.0	31.46%	12081.0	29.91%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-4.172e+00	0.0619	1252.0	26.72%	10199.4	25.25%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-4.052e+00	0.0685	1890.0	40.33%	15644.6	38.73%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-3.975e+00	0.0730	1171.0	24.99%	9535.9	23.61%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-3.950e+00	0.0740	1795.0	38.31%	14844.4	36.75%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-3.919e+00	0.0754	2023.0	43.17%	16800.8	41.59%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.827e+00	0.0817	1437.0	30.67%	11807.4	29.23%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-3.814e+00	0.0818	4096.0	87.41%	34875.8	86.34%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-1	-3.729e+00	0.0881	2179.0	46.50%	18164.3	44.97%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.625e+00	0.0966	572.0	12.21%	4541.2	11.24%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-3.581e+00	0.0998	709.0	15.13%	5688.8	14.08%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-3.492e+00	0.1078	1966.0	41.95%	16368.0	40.52%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-3.442e+00	0.1122	239.0	5.10%	1812.8	4.49%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-1	-3.394e+00	0.1164	8.0	0.17%	30.0	0.07%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-3.342e+00	0.1213	2741.0	58.49%	23065.5	57.10%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-3.303e+00	0.1248	2725.0	58.15%	22932.2	56.77%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-3.145e+00	0.1445	1630.0	34.78%	13539.7	33.52%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-3.113e+00	0.1478	1342.0	28.64%	11088.3	27.45%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-3.083e+00	0.1507	854.0	18.22%	6957.6	17.22%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.053e+00	0.1537	575.0	12.27%	4617.1	11.43%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-2.922e+00	0.1734	3771.0	80.47%	32097.8	79.46%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-2.777e+00	0.1985	21.0	0.45%	121.2	0.30%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-2.774e+00	0.1985	2087.0	44.54%	17510.8	43.35%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.758e+00	0.1985	1414.0	30.17%	11750.7	29.09%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-2.643e+00	0.2204	1101.0	23.50%	9102.1	22.53%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-1	-2.572e+00	0.2344	1733.0	36.98%	14505.8	35.91%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-1	-2.562e+00	0.2345	231.0	4.93%	1801.6	4.46%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-2.556e+00	0.2345	2976.0	63.51%	25219.5	62.44%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-2.514e+00	0.2412	853.0	18.20%	7016.8	17.37%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-2.447e+00	0.2557	713.0	15.22%	5841.5	14.46%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-2.420e+00	0.2604	298.0	6.36%	2365.5	5.86%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-2.419e+00	0.2604	3590.0	76.61%	30581.3	75.71%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-2.386e+00	0.2644	1330.0	28.38%	11089.1	27.45%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-2.384e+00	0.2644	1130.0	24.11%	9385.5	23.24%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-2.326e+00	0.2758	372.0	7.94%	2989.1	7.40%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-2.322e+00	0.2758	1009.0	21.53%	8365.2	20.71%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-2.318e+00	0.2758	428.0	9.13%	3458.4	8.56%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.270e+00	0.2840	830.0	17.71%	6853.3	16.97%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.226e+00	0.2945	2493.0	53.20%	21099.5	52.24%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-2.144e+00	0.3167	576.0	12.29%	4721.6	11.69%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.118e+00	0.3225	354.0	7.55%	2858.7	7.08%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.117e+00	0.3225	462.0	9.86%	3764.7	9.32%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.107e+00	0.3225	221.0	4.72%	1751.1	4.34%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.106e+00	0.3225	409.0	8.73%	3320.4	8.22%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.074e+00	0.3259	458.0	9.77%	3735.9	9.25%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-2.028e+00	0.3387	560.0	11.95%	4600.6	11.39%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-2.023e+00	0.3387	957.0	20.42%	7967.5	19.73%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.019e+00	0.3387	4151.0	88.58%	35552.0	88.02%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.006e+00	0.3387	1583.0	33.78%	13316.5	32.97%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.952e+00	0.3540	3283.0	70.06%	27986.1	69.29%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.927e+00	0.3599	457.0	9.75%	3743.2	9.27%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.888e+00	0.3714	46.0	0.98%	334.0	0.83%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.858e+00	0.3799	3144.0	67.09%	26798.7	66.35%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.676e+00	0.4522	4460.0	95.18%	38317.9	94.86%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.667e+00	0.4528	523.0	11.16%	4333.8	10.73%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.645e+00	0.4595	1393.0	29.73%	11757.7	29.11%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.615e+00	0.4699	4100.0	87.49%	35159.9	87.05%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.572e+00	0.4870	3167.0	67.58%	27055.5	66.98%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.548e+00	0.4954	77.0	1.64%	599.1	1.48%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.502e+00	0.5148	426.0	9.09%	3533.5	8.75%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.472e+00	0.5264	148.0	3.16%	1193.6	2.96%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.423e+00	0.5492	689.0	14.70%	5781.1	14.31%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.369e+00	0.5757	3401.0	72.58%	29126.2	72.11%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.348e+00	0.5835	363.0	7.75%	3019.8	7.48%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.328e+00	0.5914	948.0	20.23%	8011.9	19.84%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.324e+00	0.5914	568.0	12.12%	4766.3	11.80%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.313e+00	0.5917	135.0	2.88%	1097.6	2.72%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.309e+00	0.5917	48.0	1.02%	374.0	0.93%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.307e+00	0.5917	52.0	1.11%	406.7	1.01%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.243e+00	0.6217	3479.0	74.24%	29830.3	73.85%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.242e+00	0.6217	4416.0	94.24%	37977.1	94.02%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.226e+00	0.6240	368.0	7.85%	3078.3	7.62%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.225e+00	0.6240	3195.0	68.18%	27377.8	67.78%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.195e+00	0.6354	167.0	3.56%	1377.7	3.41%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.190e+00	0.6354	1266.0	27.02%	10767.6	26.66%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.190e+00	0.6354	84.0	1.79%	679.9	1.68%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.166e+00	0.6414	1110.0	23.69%	9434.1	23.36%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.164e+00	0.6414	32.0	0.68%	248.8	0.62%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.155e+00	0.6414	585.0	12.48%	4940.0	12.23%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.148e+00	0.6414	3275.0	69.89%	28088.8	69.54%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.115e+00	0.6582	3753.0	80.09%	32233.7	79.80%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.111e+00	0.6582	1079.0	23.03%	9181.2	22.73%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.106e+00	0.6582	911.0	19.44%	7741.7	19.17%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.087e+00	0.6639	895.0	19.10%	7608.9	18.84%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.061e+00	0.6771	1110.0	23.69%	9459.9	23.42%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.056e+00	0.6771	199.0	4.25%	1663.5	4.12%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.047e+00	0.6785	140.0	2.99%	1163.8	2.88%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.016e+00	0.6955	1347.0	28.75%	11507.9	28.49%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.011e+00	0.6955	1513.0	32.29%	12936.5	32.03%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.010e+00	0.6955	2020.0	43.11%	17300.1	42.83%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-9.524e-01	0.7283	3910.0	83.44%	33630.5	83.26%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-9.308e-01	0.7398	1199.0	25.59%	10258.7	25.40%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-9.275e-01	0.7398	412.0	8.79%	3501.1	8.67%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-9.255e-01	0.7398	745.0	15.90%	6358.4	15.74%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-9.176e-01	0.7398	386.0	8.24%	3280.3	8.12%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-8.850e-01	0.7566	428.0	9.13%	3646.7	9.03%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-8.697e-01	0.7639	385.0	8.22%	3280.2	8.12%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-8.328e-01	0.7881	167.0	3.56%	1418.0	3.51%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-8.276e-01	0.7881	568.0	12.12%	4860.3	12.03%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-7.963e-01	0.8082	767.0	16.37%	6579.8	16.29%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-7.831e-01	0.8144	90.0	1.92%	763.9	1.89%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-7.646e-01	0.8250	1922.0	41.02%	16536.6	40.94%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-7.607e-01	0.8250	1553.0	33.14%	13358.0	33.07%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-7.289e-01	0.8456	2074.0	44.26%	17859.6	44.22%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-7.239e-01	0.8456	3123.0	66.65%	26903.6	66.61%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-7.159e-01	0.8473	1678.0	35.81%	14451.2	35.78%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-7.125e-01	0.8473	98.0	2.09%	839.0	2.08%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-6.763e-01	0.8721	818.0	17.46%	7052.5	17.46%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-6.701e-01	0.8728	1180.0	25.18%	10175.8	25.19%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-6.487e-01	0.8869	2051.0	43.77%	17692.9	43.80%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-6.288e-01	0.9000	1131.0	24.14%	9767.1	24.18%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-6.243e-01	0.9000	139.0	2.97%	1204.5	2.98%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-6.049e-01	0.9121	1901.0	40.57%	16417.9	40.65%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-5.781e-01	0.9320	394.0	8.41%	3419.1	8.46%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-5.586e-01	0.9455	9.0	0.19%	79.5	0.20%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-5.549e-01	0.9455	44.0	0.94%	387.7	0.96%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-5.512e-01	0.9455	1918.0	40.93%	16588.0	41.07%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-5.509e-01	0.9455	867.0	18.50%	7516.3	18.61%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-5.290e-01	0.9541	551.0	11.76%	4791.5	11.86%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-5.095e-01	0.9680	113.0	2.41%	995.2	2.46%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-5.018e-01	0.9705	83.0	1.77%	734.9	1.82%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-4.981e-01	0.9705	2178.0	46.48%	18854.5	46.68%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.846e-01	0.9775	783.0	16.71%	6814.8	16.87%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-4.738e-01	0.9833	28.0	0.60%	253.2	0.63%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-4.580e-01	0.9940	2155.0	45.99%	18676.3	46.24%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-4.497e-01	0.9974	28.0	0.60%	255.8	0.63%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-4.323e-01	1.0000	1114.0	23.77%	9700.9	24.02%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-4.288e-01	1.0000	3399.0	72.54%	29401.2	72.79%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-4.159e-01	1.0000	772.0	16.47%	6746.7	16.70%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-4.144e-01	1.0000	452.0	9.65%	3970.0	9.83%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-4.138e-01	1.0000	1957.0	41.76%	16992.5	42.07%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.028e-01	1.0000	3053.0	65.15%	26440.4	65.46%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-4.021e-01	1.0000	246.0	5.25%	2178.9	5.39%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-3.977e-01	1.0000	756.0	16.13%	6615.7	16.38%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-3.813e-01	1.0000	160.0	3.41%	1430.8	3.54%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-3.742e-01	1.0000	2860.0	61.03%	24796.9	61.39%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-3.572e-01	1.0000	2711.0	57.85%	23524.6	58.24%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-3.548e-01	1.0000	170.0	3.63%	1524.4	3.77%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-3.532e-01	1.0000	2353.0	50.21%	20443.5	50.61%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-3.469e-01	1.0000	33.0	0.70%	310.6	0.77%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-3.421e-01	1.0000	127.0	2.71%	1148.9	2.84%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-3.388e-01	1.0000	199.0	4.25%	1783.5	4.42%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.351e-01	1.0000	164.0	3.50%	1476.4	3.66%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-3.299e-01	1.0000	473.0	10.09%	4183.8	10.36%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.222e-01	1.0000	1254.0	26.76%	10970.2	27.16%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-3.093e-01	1.0000	475.0	10.14%	4209.6	10.42%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-3.089e-01	1.0000	729.0	15.56%	6422.8	15.90%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-3.051e-01	1.0000	2340.0	49.94%	20363.6	50.41%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.897e-01	1.0000	1748.0	37.30%	15265.6	37.79%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.773e-01	1.0000	237.0	5.06%	2136.9	5.29%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.722e-01	1.0000	1577.0	33.65%	13799.3	34.16%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.467e-01	1.0000	745.0	15.90%	6596.4	16.33%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.449e-01	1.0000	3268.0	69.74%	28387.7	70.28%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-2.337e-01	1.0000	2414.0	51.52%	21056.9	52.13%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-2.329e-01	1.0000	1781.0	38.01%	15594.7	38.61%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.307e-01	1.0000	2593.0	55.34%	22600.2	55.95%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-2.291e-01	1.0000	2859.0	61.01%	24889.3	61.62%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.267e-01	1.0000	389.0	8.30%	3494.5	8.65%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.221e-01	1.0000	898.0	19.16%	7946.0	19.67%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.205e-01	1.0000	3370.0	71.92%	29280.8	72.49%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-2.203e-01	1.0000	1597.0	34.08%	14013.5	34.69%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-2.086e-01	1.0000	2480.0	52.92%	21647.7	53.59%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.700e-01	1.0000	1554.0	33.16%	13688.2	33.89%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.434e-01	1.0000	371.0	7.92%	3384.7	8.38%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.329e-01	1.0000	1711.0	36.51%	15091.4	37.36%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.300e-01	1.0000	314.0	6.70%	2888.0	7.15%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.300e-01	1.0000	237.0	5.06%	2202.3	5.45%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.265e-01	1.0000	1565.0	33.40%	13834.7	34.25%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.252e-01	1.0000	2641.0	56.36%	23126.0	57.25%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.249e-01	1.0000	1144.0	24.41%	10177.7	25.20%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.243e-01	1.0000	372.0	7.94%	3407.1	8.44%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.221e-01	1.0000	772.0	16.47%	6932.0	17.16%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.213e-01	1.0000	643.0	13.72%	5800.9	14.36%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.198e-01	1.0000	562.0	11.99%	5089.3	12.60%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.193e-01	1.0000	3011.0	64.26%	26310.8	65.14%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.180e-01	1.0000	1132.0	24.16%	10081.2	24.96%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.167e-01	1.0000	2195.0	46.84%	19297.0	47.77%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.160e-01	1.0000	284.0	6.06%	2631.6	6.51%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.158e-01	1.0000	1492.0	31.84%	13215.3	32.72%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.104e-01	1.0000	1174.0	25.05%	10457.6	25.89%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.011e-01	1.0000	293.0	6.25%	2723.6	6.74%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-9.385e-02	1.0000	1309.0	27.93%	11657.7	28.86%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-9.030e-02	1.0000	330.0	7.04%	3063.5	7.58%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-8.691e-02	1.0000	997.0	21.28%	8946.2	22.15%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-8.302e-02	1.0000	28.0	0.60%	311.5	0.77%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-8.281e-02	1.0000	3368.0	71.87%	29418.1	72.83%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-7.960e-02	1.0000	2009.0	42.87%	17754.5	43.95%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.101e-02	1.0000	153.0	3.27%	1486.4	3.68%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.101e-02	1.0000	153.0	3.27%	1486.4	3.68%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-6.646e-02	1.0000	1701.0	36.30%	15115.4	37.42%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-6.615e-02	1.0000	867.0	18.50%	7843.0	19.42%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.985e-02	1.0000	1612.0	34.40%	14358.7	35.55%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-5.940e-02	1.0000	499.0	10.65%	4606.0	11.40%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-5.878e-02	1.0000	1393.0	29.73%	12456.3	30.84%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-5.677e-02	1.0000	1228.0	26.21%	11022.5	27.29%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-4.990e-02	1.0000	1669.0	35.62%	14879.4	36.84%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-4.914e-02	1.0000	1978.0	42.21%	17559.4	43.47%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-4.847e-02	1.0000	1929.0	41.17%	17137.3	42.43%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-4.675e-02	1.0000	883.0	18.84%	8024.0	19.87%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-4.453e-02	1.0000	407.0	8.69%	3812.9	9.44%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-4.343e-02	1.0000	1285.0	27.42%	11555.0	28.61%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-4.132e-02	1.0000	414.0	8.83%	3881.3	9.61%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-3.807e-02	1.0000	218.0	4.65%	2118.9	5.25%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-3.682e-02	1.0000	225.0	4.80%	2184.9	5.41%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-3.359e-02	1.0000	368.0	7.85%	3485.0	8.63%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-3.014e-02	1.0000	1809.0	38.60%	16163.3	40.02%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.930e-02	1.0000	495.0	10.56%	4635.1	11.48%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.911e-02	1.0000	1174.0	25.05%	10634.7	26.33%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.888e-02	1.0000	1650.0	35.21%	14788.2	36.61%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.717e-02	1.0000	2795.0	59.65%	24675.6	61.09%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-2.621e-02	1.0000	3401.0	72.58%	29846.7	73.89%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.532e-02	1.0000	4006.0	85.49%	34947.9	86.52%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.487e-02	1.0000	35.0	0.75%	415.4	1.03%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.376e-02	1.0000	3254.0	69.44%	28609.5	70.83%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.322e-02	1.0000	287.0	6.12%	2779.2	6.88%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.258e-02	1.0000	1248.0	26.63%	11312.4	28.01%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.227e-02	1.0000	1995.0	42.57%	17815.0	44.10%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.145e-02	1.0000	778.0	16.60%	7181.4	17.78%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.964e-02	1.0000	567.0	12.10%	5313.3	13.15%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.861e-02	1.0000	1211.0	25.84%	11010.7	27.26%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.846e-02	1.0000	1459.0	31.14%	13180.4	32.63%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.726e-02	1.0000	893.0	19.06%	8220.9	20.35%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.523e-02	1.0000	1600.0	34.14%	14432.8	35.73%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.368e-02	1.0000	400.0	8.54%	3841.9	9.51%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.327e-02	1.0000	48.0	1.02%	564.6	1.40%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.254e-02	1.0000	2715.0	57.94%	24085.9	59.63%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.048e-02	1.0000	602.0	12.85%	5679.2	14.06%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.006e-02	1.0000	1602.0	34.19%	14497.0	35.89%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-9.014e-03	1.0000	306.0	6.53%	3013.2	7.46%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-6.875e-03	1.0000	2281.0	48.68%	20425.2	50.57%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-6.663e-03	1.0000	310.0	6.62%	3068.4	7.60%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-6.229e-03	1.0000	479.0	10.22%	4612.6	11.42%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-4.740e-03	1.0000	1121.0	23.92%	10359.3	25.65%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.980e-03	1.0000	215.0	4.59%	2229.6	5.52%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-2.876e-03	1.0000	3733.0	79.66%	32851.4	81.33%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-2.122e-03	1.0000	1648.0	35.17%	15059.2	37.28%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.030e-03	1.0000	910.0	19.42%	8617.2	21.33%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-9.860e-04	1.0000	3199.0	68.27%	28456.6	70.45%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-5.800e-04	1.0000	403.0	8.60%	4064.6	10.06%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-4.180e-04	1.0000	1181.0	25.20%	11096.2	27.47%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-7.000e-06	1.0000	35.0	0.75%	589.5	1.46%