Information for 12-CTAGGC (Motif 13)


Reverse Opposite:

p-value:1e-84
log p-value:-1.955e+02
Information Content per bp:1.878
Number of Target Sequences with motif17727.0
Percentage of Target Sequences with motif67.10%
Number of Background Sequences with motif15633.9
Percentage of Background Sequences with motif61.30%
Average Position of motif in Targets200.5 +/- 114.6bp
Average Position of motif in Background198.5 +/- 123.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.69
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD3/MA0795.1/Jaspar

Match Rank:1
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CTAGGC-
TGTCTAGACG

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CTAGGC--
CTAGGCCT

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTAGGC--
CNAGGCCT

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTAGGC-
GCTAATCC

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTAGGC--
BCAGACWA

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTAGGC-
WDNCTGGGCA

Crx/MA0467.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTAGGC-----
CTAATCCTCTT

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CTAGGC------
CAAATCCAGACATCACA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTAGGC--
CCAGACAG

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------CTAGGC--
BCNGGTTCTAGANCN