Information for 19-GNTTCTGG (Motif 18)


Reverse Opposite:

p-value:1e-59
log p-value:-1.377e+02
Information Content per bp:1.472
Number of Target Sequences with motif10565.0
Percentage of Target Sequences with motif39.99%
Number of Background Sequences with motif8961.7
Percentage of Background Sequences with motif35.14%
Average Position of motif in Targets200.1 +/- 112.9bp
Average Position of motif in Background201.7 +/- 118.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.27
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GNTTCTGG---
-GGTCTGGCAT

RUNX1/MA0002.2/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GNTTCTGG---
GTCTGTGGTTT

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GNTTCTGG----
NNHTGTGGTTWN

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GNTTCTGG
VBSYGTCTGG

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GNTTCTGG-----
NNTNNTGTCTGGNNTNG

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GNTTCTGG-
NRYTTCCGGY

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GNTTCTGG---
-WDNCTGGGCA

POL002.1_INR/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GNTTCTGG
NNNANTGA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GNTTCTGG
CTGTCTGG

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GNTTCTGG
TGGTTTCAGT