Information for 2-AAACG (Motif 2)


Reverse Opposite:

p-value:1e-168
log p-value:-3.884e+02
Information Content per bp:1.813
Number of Target Sequences with motif13108.0
Percentage of Target Sequences with motif49.62%
Number of Background Sequences with motif10497.5
Percentage of Background Sequences with motif41.16%
Average Position of motif in Targets200.6 +/- 113.3bp
Average Position of motif in Background199.9 +/- 138.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.53
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BARHL2/MA0635.1/Jaspar

Match Rank:1
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---AAACG--
GCTAAACGGT

PH0044.1_Homez/Jaspar

Match Rank:2
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----AAACG-------
NNTAAAAACGATGTTNT

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:AAACG---
AACCGANA

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AAACG----
NHAACBGYYV

PB0045.1_Myb_1/Jaspar

Match Rank:5
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AAACG-------
ATGGAAACCGTTATTTT

PB0046.1_Mybl1_1/Jaspar

Match Rank:6
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AAACG-------
TTGAAAACCGTTAATTT

RUNX2/MA0511.2/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AAACG---
AAACCGCAA

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AAACG--
YAACBGCC

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AAACG-----
AGAAACGAAAGT

TFCP2/MA0145.3/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAACG----
AAACCGGTTT