Information for 22-TGGCTG (Motif 20)


Reverse Opposite:

p-value:1e-47
log p-value:-1.100e+02
Information Content per bp:1.881
Number of Target Sequences with motif16841.0
Percentage of Target Sequences with motif63.75%
Number of Background Sequences with motif15141.7
Percentage of Background Sequences with motif59.37%
Average Position of motif in Targets198.8 +/- 112.9bp
Average Position of motif in Background199.6 +/- 121.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-TGGCTG-
TWGTCTGV

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:TGGCTG
-NGCTN

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TGGCTG
TTGGCA-

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TGGCTG--
TGATTGGCTANN

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TGGCTG-
NTTGGCANN

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.67
Offset:-8
Orientation:forward strand
Alignment:--------TGGCTG-
GTCATGCHTGRCTGS

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:7
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TGGCTG
NNTGTGGTTT

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TGGCTG--
--GCTGTG

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGGCTG-
CTGTCTGG

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TGGCTG
CCGATTGGCT-