Information for 20-CACGTGA (Motif 21)


Reverse Opposite:

p-value:1e-44
log p-value:-1.030e+02
Information Content per bp:1.927
Number of Target Sequences with motif2483.0
Percentage of Target Sequences with motif9.40%
Number of Background Sequences with motif1803.9
Percentage of Background Sequences with motif7.07%
Average Position of motif in Targets200.1 +/- 118.8bp
Average Position of motif in Background195.3 +/- 126.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Id2/MA0617.1/Jaspar

Match Rank:1
Score:0.98
Offset:-1
Orientation:forward strand
Alignment:-CACGTGA
GCACGTGA

Arnt/MA0004.1/Jaspar

Match Rank:2
Score:0.97
Offset:0
Orientation:forward strand
Alignment:CACGTGA
CACGTG-

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:3
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:CACGTGA-
CACGTGDC

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:4
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:CACGTGA-
CACGTGNC

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.96
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGA--
TCACGTGACC

Arntl/MA0603.1/Jaspar

Match Rank:6
Score:0.96
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGA--
NCACGTGACN

Mlxip/MA0622.1/Jaspar

Match Rank:7
Score:0.96
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGA
ACACGTGC

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:CACGTGA-
CACGTGGN

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-CACGTGA--
KCACGTGMCN

MNT/MA0825.1/Jaspar

Match Rank:10
Score:0.95
Offset:-2
Orientation:forward strand
Alignment:--CACGTGA-
ACCACGTGCC