Information for 23-TAAATCC (Motif 23)


Reverse Opposite:

p-value:1e-38
log p-value:-8.873e+01
Information Content per bp:1.798
Number of Target Sequences with motif7206.0
Percentage of Target Sequences with motif27.28%
Number of Background Sequences with motif6070.5
Percentage of Background Sequences with motif23.80%
Average Position of motif in Targets199.0 +/- 114.7bp
Average Position of motif in Background202.9 +/- 121.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----TAAATCC-
GGCCATAAATCAC

PH0138.1_Pitx2/Jaspar

Match Rank:2
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----TAAATCC-----
GNNNATTAATCCCTNCN

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:3
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TAAATCC--
NYTAATCCYB

PH0130.1_Otx2/Jaspar

Match Rank:4
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----TAAATCC-----
GANNATTAATCCCTNNN

PH0137.1_Pitx1/Jaspar

Match Rank:5
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TAAATCC------
NTTGTTAATCCCTCTNN

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TAAATCC-
CTTAATCCC

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----TAAATCC-----
NNNAATTAATCCCCNCN

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.72
Offset:1
Orientation:forward strand
Alignment:TAAATCC--
-TAATCCCN

OTX2/MA0712.1/Jaspar

Match Rank:9
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TAAATCC-
TTAATCCT

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TAAATCC-
TTAATCCC