Information for 6-CGCBCTTT (Motif 4)


Reverse Opposite:

p-value:1e-118
log p-value:-2.730e+02
Information Content per bp:1.726
Number of Target Sequences with motif12637.0
Percentage of Target Sequences with motif47.83%
Number of Background Sequences with motif10398.1
Percentage of Background Sequences with motif40.77%
Average Position of motif in Targets199.3 +/- 112.8bp
Average Position of motif in Background194.8 +/- 135.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.41
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

E2F3/MA0469.2/Jaspar

Match Rank:1
Score:0.66
Offset:-8
Orientation:reverse strand
Alignment:--------CGCBCTTT--
AAAAATGGCGCCATTTTT

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CGCBCTTT
GTCCGCCATTA

PB0008.1_E2F2_1/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CGCBCTTT---
NTCGCGCGCCTTNNN

E2F2/MA0864.1/Jaspar

Match Rank:4
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------CGCBCTTT-
AAAATGGCGCCATTTT

PB0009.1_E2F3_1/Jaspar

Match Rank:5
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------CGCBCTTT-
ANCGCGCGCCCTTNN

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CGCBCTTT----
TGACCTTTNCNT

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CGCBCTTT----
NNNNTGACCTTTNNNN

PB0053.1_Rara_1/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CGCBCTTT----
NNNGTGACCTTTGNNN

PB0136.1_IRC900814_2/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----CGCBCTTT---
TTTTACGACTTTCCAT

YY1(Zf)/Promoter/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CGCBCTTT--
GCCGCCATCTTG