Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 26418)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 25500)	% of Background Sequences with Motif
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-235	-5.418e+02	0.0000	5738.0	21.72%	3628.6	14.23%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-226	-5.221e+02	0.0000	5671.0	21.47%	3605.3	14.14%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-211	-4.860e+02	0.0000	8101.0	30.66%	5712.9	22.40%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-206	-4.759e+02	0.0000	5124.0	19.40%	3237.9	12.70%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-193	-4.465e+02	0.0000	3405.0	12.89%	1938.4	7.60%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-161	-3.723e+02	0.0000	5305.0	20.08%	3565.9	13.98%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-157	-3.628e+02	0.0000	6379.0	24.15%	4488.5	17.60%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-145	-3.351e+02	0.0000	8612.0	32.60%	6506.1	25.51%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-126	-2.910e+02	0.0000	4593.0	17.39%	3134.0	12.29%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-116	-2.680e+02	0.0000	6566.0	24.85%	4872.0	19.10%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-99	-2.284e+02	0.0000	3654.0	13.83%	2486.5	9.75%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-86	-1.991e+02	0.0000	8795.0	33.29%	7076.8	27.75%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-84	-1.956e+02	0.0000	2255.0	8.54%	1420.7	5.57%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-83	-1.920e+02	0.0000	2237.0	8.47%	1412.9	5.54%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-77	-1.777e+02	0.0000	1143.0	4.33%	607.8	2.38%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-76	-1.766e+02	0.0000	5498.0	20.81%	4191.0	16.43%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-76	-1.758e+02	0.0000	5451.0	20.63%	4152.5	16.28%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-74	-1.723e+02	0.0000	1502.0	5.69%	877.8	3.44%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-68	-1.576e+02	0.0000	8326.0	31.52%	6800.0	26.66%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-66	-1.532e+02	0.0000	708.0	2.68%	332.5	1.30%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-65	-1.519e+02	0.0000	5122.0	19.39%	3937.7	15.44%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-64	-1.475e+02	0.0000	6909.0	26.15%	5547.5	21.75%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-62	-1.446e+02	0.0000	11486.0	43.48%	9798.5	38.42%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-59	-1.371e+02	0.0000	6758.0	25.58%	5450.2	21.37%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-55	-1.276e+02	0.0000	971.0	3.68%	544.8	2.14%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-54	-1.256e+02	0.0000	2655.0	10.05%	1889.4	7.41%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-54	-1.252e+02	0.0000	2282.0	8.64%	1580.9	6.20%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-53	-1.238e+02	0.0000	4073.0	15.42%	3108.6	12.19%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-52	-1.205e+02	0.0000	6898.0	26.11%	5643.5	22.13%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-51	-1.181e+02	0.0000	928.0	3.51%	525.9	2.06%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-50	-1.161e+02	0.0000	708.0	2.68%	369.4	1.45%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-48	-1.113e+02	0.0000	2947.0	11.16%	2174.7	8.53%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-45	-1.057e+02	0.0000	2540.0	9.61%	1844.2	7.23%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-44	-1.018e+02	0.0000	13986.0	52.94%	12403.0	48.63%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-43	-1.013e+02	0.0000	1651.0	6.25%	1117.8	4.38%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-39	-9.052e+01	0.0000	4185.0	15.84%	3323.2	13.03%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-38	-8.805e+01	0.0000	792.0	3.00%	467.0	1.83%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-29	-6.776e+01	0.0000	12013.0	45.47%	10715.9	42.02%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-28	-6.644e+01	0.0000	258.0	0.98%	113.2	0.44%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-27	-6.388e+01	0.0000	2743.0	10.38%	2152.4	8.44%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-27	-6.310e+01	0.0000	11074.0	41.92%	9851.7	38.63%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-25	-5.964e+01	0.0000	5376.0	20.35%	4541.7	17.81%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-25	-5.899e+01	0.0000	7157.0	27.09%	6190.4	24.27%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-25	-5.821e+01	0.0000	2677.0	10.13%	2116.8	8.30%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-25	-5.791e+01	0.0000	304.0	1.15%	151.7	0.59%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-24	-5.747e+01	0.0000	3382.0	12.80%	2745.4	10.76%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-22	-5.289e+01	0.0000	2923.0	11.06%	2356.6	9.24%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-22	-5.193e+01	0.0000	615.0	2.33%	390.0	1.53%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-21	-4.940e+01	0.0000	3677.0	13.92%	3049.3	11.96%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-20	-4.747e+01	0.0000	8333.0	31.54%	7369.7	28.90%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-20	-4.729e+01	0.0000	3772.0	14.28%	3146.2	12.34%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-20	-4.722e+01	0.0000	266.0	1.01%	137.0	0.54%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-20	-4.656e+01	0.0000	4100.0	15.52%	3448.7	13.52%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-19	-4.580e+01	0.0000	1441.0	5.45%	1086.5	4.26%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-19	-4.538e+01	0.0000	266.0	1.01%	138.6	0.54%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-19	-4.402e+01	0.0000	503.0	1.90%	316.3	1.24%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-18	-4.358e+01	0.0000	1318.0	4.99%	988.8	3.88%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-18	-4.332e+01	0.0000	5388.0	20.40%	4650.8	18.24%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-18	-4.165e+01	0.0000	609.0	2.31%	404.8	1.59%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-18	-4.154e+01	0.0000	3189.0	12.07%	2649.7	10.39%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-17	-4.062e+01	0.0000	4164.0	15.76%	3541.2	13.88%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-17	-4.057e+01	0.0000	3466.0	13.12%	2906.0	11.39%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-17	-4.031e+01	0.0000	2909.0	11.01%	2403.9	9.43%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-16	-3.771e+01	0.0000	4020.0	15.22%	3427.9	13.44%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-15	-3.467e+01	0.0000	3772.0	14.28%	3219.2	12.62%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-14	-3.437e+01	0.0000	3143.0	11.90%	2647.4	10.38%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-14	-3.392e+01	0.0000	3306.0	12.51%	2798.0	10.97%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-14	-3.368e+01	0.0000	2405.0	9.10%	1984.7	7.78%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-14	-3.360e+01	0.0000	17517.0	66.31%	16324.8	64.01%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-14	-3.238e+01	0.0000	2085.0	7.89%	1704.1	6.68%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-13	-3.216e+01	0.0000	7708.0	29.18%	6904.5	27.07%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-13	-3.112e+01	0.0000	8165.0	30.91%	7345.8	28.80%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-12	-2.972e+01	0.0000	7236.0	27.39%	6481.9	25.41%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-12	-2.777e+01	0.0000	1916.0	7.25%	1576.4	6.18%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-12	-2.764e+01	0.0000	6214.0	23.52%	5539.1	21.72%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-11	-2.703e+01	0.0000	2212.0	8.37%	1846.5	7.24%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-11	-2.642e+01	0.0000	7834.0	29.65%	7077.7	27.75%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-11	-2.640e+01	0.0000	12384.0	46.88%	11419.0	44.77%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-10	-2.471e+01	0.0000	6499.0	24.60%	5834.4	22.88%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-10	-2.304e+01	0.0000	949.0	3.59%	742.4	2.91%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-9	-2.270e+01	0.0000	14753.0	55.84%	13749.1	53.91%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-9	-2.184e+01	0.0000	766.0	2.90%	588.8	2.31%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-9	-2.167e+01	0.0000	1017.0	3.85%	807.7	3.17%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-9	-2.135e+01	0.0000	2521.0	9.54%	2162.3	8.48%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-9	-2.082e+01	0.0000	1786.0	6.76%	1497.7	5.87%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-8	-2.022e+01	0.0000	555.0	2.10%	413.0	1.62%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-8	-1.997e+01	0.0000	3275.0	12.40%	2866.6	11.24%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-8	-1.994e+01	0.0000	874.0	3.31%	689.7	2.70%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-8	-1.979e+01	0.0000	793.0	3.00%	619.2	2.43%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-8	-1.894e+01	0.0000	1194.0	4.52%	976.1	3.83%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-8	-1.874e+01	0.0000	14670.0	55.53%	13719.4	53.79%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-8	-1.873e+01	0.0000	1222.0	4.63%	1002.2	3.93%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-8	-1.866e+01	0.0000	8009.0	30.32%	7328.2	28.73%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-7	-1.838e+01	0.0000	610.0	2.31%	466.6	1.83%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-7	-1.828e+01	0.0000	5831.0	22.07%	5271.4	20.67%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-7	-1.817e+01	0.0000	2606.0	9.86%	2263.9	8.88%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-7	-1.807e+01	0.0000	5510.0	20.86%	4971.6	19.49%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-7	-1.801e+01	0.0000	4098.0	15.51%	3648.9	14.31%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-7	-1.731e+01	0.0000	785.0	2.97%	622.4	2.44%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-7	-1.731e+01	0.0000	3350.0	12.68%	2958.2	11.60%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-7	-1.707e+01	0.0000	1366.0	5.17%	1140.6	4.47%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-7	-1.691e+01	0.0000	627.0	2.37%	486.5	1.91%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-7	-1.672e+01	0.0000	6180.0	23.39%	5618.1	22.03%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-7	-1.624e+01	0.0000	654.0	2.48%	512.1	2.01%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-7	-1.614e+01	0.0000	6624.0	25.07%	6045.2	23.70%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-6	-1.586e+01	0.0000	2442.0	9.24%	2130.3	8.35%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-6	-1.544e+01	0.0000	1170.0	4.43%	973.0	3.82%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-6	-1.505e+01	0.0000	3363.0	12.73%	2991.4	11.73%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-6	-1.477e+01	0.0000	2520.0	9.54%	2212.0	8.67%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-6	-1.446e+01	0.0000	843.0	3.19%	687.0	2.69%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-6	-1.404e+01	0.0000	926.0	3.51%	762.4	2.99%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-6	-1.385e+01	0.0000	2268.0	8.59%	1986.9	7.79%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-5	-1.362e+01	0.0000	8427.0	31.90%	7793.9	30.56%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-5	-1.352e+01	0.0000	521.0	1.97%	407.5	1.60%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-5	-1.315e+01	0.0000	1895.0	7.17%	1648.0	6.46%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-5	-1.267e+01	0.0000	1565.0	5.92%	1349.2	5.29%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-5	-1.213e+01	0.0000	494.0	1.87%	389.7	1.53%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-5	-1.207e+01	0.0000	66.0	0.25%	35.1	0.14%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-5	-1.192e+01	0.0000	912.0	3.45%	761.5	2.99%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-5	-1.170e+01	0.0000	323.0	1.22%	243.3	0.95%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-5	-1.163e+01	0.0000	1979.0	7.49%	1738.5	6.82%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-4	-1.132e+01	0.0000	259.0	0.98%	190.7	0.75%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-4	-1.111e+01	0.0000	7420.0	28.09%	6871.8	26.94%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-3	-9.040e+00	0.0003	1261.0	4.77%	1098.9	4.31%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-3	-8.610e+00	0.0005	3396.0	12.85%	3094.5	12.13%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-3	-8.471e+00	0.0005	6381.0	24.15%	5925.8	23.23%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-3	-8.399e+00	0.0006	15547.0	58.85%	14737.6	57.78%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-3	-8.127e+00	0.0007	1957.0	7.41%	1751.2	6.87%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-3	-8.000e+00	0.0008	996.0	3.77%	863.1	3.38%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-3	-7.949e+00	0.0009	633.0	2.40%	533.6	2.09%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-3	-7.948e+00	0.0009	10705.0	40.52%	10074.4	39.50%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-3	-7.445e+00	0.0014	2101.0	7.95%	1893.2	7.42%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-3	-7.153e+00	0.0019	654.0	2.48%	557.9	2.19%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-3	-7.117e+00	0.0019	2021.0	7.65%	1822.8	7.15%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-3	-7.077e+00	0.0020	3335.0	12.62%	3059.0	11.99%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-2	-6.628e+00	0.0031	410.0	1.55%	340.8	1.34%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-2	-6.444e+00	0.0037	266.0	1.01%	213.0	0.84%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-2	-6.053e+00	0.0054	169.0	0.64%	130.5	0.51%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-2	-5.998e+00	0.0057	585.0	2.21%	503.0	1.97%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-2	-5.858e+00	0.0065	507.0	1.92%	432.6	1.70%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-2	-5.804e+00	0.0068	2175.0	8.23%	1983.6	7.78%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-2	-5.594e+00	0.0084	3848.0	14.57%	3568.7	13.99%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-2	-5.461e+00	0.0095	5112.0	19.35%	4773.9	18.72%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-2	-5.200e+00	0.0122	1828.0	6.92%	1665.0	6.53%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-2	-5.100e+00	0.0134	419.0	1.59%	357.8	1.40%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-2	-5.073e+00	0.0137	2703.0	10.23%	2492.5	9.77%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-2	-4.986e+00	0.0148	1281.0	4.85%	1155.7	4.53%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-2	-4.900e+00	0.0160	1565.0	5.92%	1422.7	5.58%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-2	-4.793e+00	0.0177	2438.0	9.23%	2246.5	8.81%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-2	-4.668e+00	0.0200	3618.0	13.70%	3367.2	13.20%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-2	-4.607e+00	0.0211	2968.0	11.23%	2751.7	10.79%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-1	-4.294e+00	0.0287	24.0	0.09%	14.1	0.06%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-4.018e+00	0.0375	3031.0	11.47%	2822.5	11.07%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-1	-3.966e+00	0.0393	335.0	1.27%	288.9	1.13%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-3.932e+00	0.0403	3749.0	14.19%	3507.8	13.75%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-3.846e+00	0.0437	299.0	1.13%	256.1	1.00%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-3.795e+00	0.0457	384.0	1.45%	334.6	1.31%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-3.793e+00	0.0457	66.0	0.25%	49.3	0.19%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-3.787e+00	0.0457	1898.0	7.18%	1752.1	6.87%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-1	-3.631e+00	0.0528	529.0	2.00%	469.1	1.84%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-1	-3.317e+00	0.0718	1862.0	7.05%	1726.1	6.77%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-3.287e+00	0.0735	5040.0	19.08%	4756.2	18.65%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-3.031e+00	0.0945	2699.0	10.22%	2527.6	9.91%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-2.891e+00	0.1080	1399.0	5.30%	1295.5	5.08%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-1	-2.704e+00	0.1294	3895.0	14.74%	3677.7	14.42%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-2.687e+00	0.1309	4091.0	15.49%	3865.5	15.16%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-2.603e+00	0.1414	2062.0	7.81%	1930.0	7.57%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-1	-2.583e+00	0.1435	749.0	2.84%	686.6	2.69%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-2.488e+00	0.1568	3302.0	12.50%	3116.4	12.22%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-2.443e+00	0.1631	5427.0	20.54%	5153.1	20.20%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.378e+00	0.1730	2650.0	10.03%	2496.4	9.79%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-2.363e+00	0.1746	72.0	0.27%	59.9	0.23%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-2.309e+00	0.1833	5895.0	22.31%	5607.5	21.99%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.116e+00	0.2209	231.0	0.87%	206.9	0.81%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-2.066e+00	0.2309	1368.0	5.18%	1281.7	5.03%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.046e+00	0.2342	2998.0	11.35%	2838.5	11.13%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.956e+00	0.2549	714.0	2.70%	662.3	2.60%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.852e+00	0.2811	4119.0	15.59%	3919.3	15.37%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.840e+00	0.2831	524.0	1.98%	484.1	1.90%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.837e+00	0.2831	453.0	1.71%	417.5	1.64%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.818e+00	0.2863	1080.0	4.09%	1012.0	3.97%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.758e+00	0.3022	1428.0	5.41%	1345.9	5.28%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.610e+00	0.3485	609.0	2.31%	568.3	2.23%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.601e+00	0.3498	1469.0	5.56%	1388.1	5.44%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.567e+00	0.3599	5705.0	21.60%	5455.4	21.39%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.555e+00	0.3623	201.0	0.76%	183.7	0.72%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.412e+00	0.4155	7966.0	30.15%	7640.5	29.96%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.403e+00	0.4171	1856.0	7.03%	1764.6	6.92%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.402e+00	0.4171	5758.0	21.80%	5514.9	21.62%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.337e+00	0.4409	6523.0	24.69%	6254.0	24.52%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.272e+00	0.4682	1787.0	6.76%	1702.4	6.67%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.171e+00	0.5154	2229.0	8.44%	2130.2	8.35%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.167e+00	0.5154	1301.0	4.92%	1239.4	4.86%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.115e+00	0.5393	7880.0	29.83%	7575.1	29.70%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-9.890e-01	0.6084	756.0	2.86%	721.2	2.83%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-9.825e-01	0.6093	3651.0	13.82%	3507.2	13.75%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-9.725e-01	0.6123	446.0	1.69%	424.8	1.67%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-9.066e-01	0.6507	1794.0	6.79%	1723.0	6.76%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-8.561e-01	0.6810	2651.0	10.03%	2550.7	10.00%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-8.485e-01	0.6828	11286.0	42.72%	10881.1	42.66%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-8.300e-01	0.6921	4287.0	16.23%	4129.2	16.19%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-8.187e-01	0.6964	479.0	1.81%	459.2	1.80%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-8.040e-01	0.7033	29.0	0.11%	27.7	0.11%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-7.765e-01	0.7193	891.0	3.37%	858.0	3.36%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-6.831e-01	0.7859	4346.0	16.45%	4196.5	16.45%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-6.627e-01	0.7982	118.0	0.45%	114.4	0.45%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-6.497e-01	0.8047	5438.0	20.58%	5253.0	20.60%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-6.402e-01	0.8085	30.0	0.11%	29.1	0.11%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.218e-01	0.8157	295.0	1.12%	286.6	1.12%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.218e-01	0.8157	295.0	1.12%	286.6	1.12%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-6.155e-01	0.8169	973.0	3.68%	942.8	3.70%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-5.938e-01	0.8309	218.0	0.83%	212.6	0.83%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-5.667e-01	0.8497	2197.0	8.32%	2128.2	8.34%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-5.646e-01	0.8497	405.0	1.53%	394.2	1.55%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.570e-01	0.8500	1942.0	7.35%	1882.9	7.38%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-5.278e-01	0.8712	2151.0	8.14%	2087.0	8.18%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-5.216e-01	0.8726	1668.0	6.31%	1619.9	6.35%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.137e-01	0.8755	127.0	0.48%	125.9	0.49%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-5.021e-01	0.8816	1420.0	5.38%	1380.4	5.41%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-4.779e-01	0.8991	4983.0	18.86%	4829.5	18.94%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-4.707e-01	0.9016	1316.0	4.98%	1281.8	5.03%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-4.678e-01	0.9016	1025.0	3.88%	999.8	3.92%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-4.374e-01	0.9237	976.0	3.69%	953.6	3.74%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-4.372e-01	0.9237	2353.0	8.91%	2288.4	8.97%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-4.276e-01	0.9245	3168.0	11.99%	3078.7	12.07%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-4.175e-01	0.9297	306.0	1.16%	302.7	1.19%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-3.994e-01	0.9426	1697.0	6.42%	1655.9	6.49%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-3.888e-01	0.9484	3505.0	13.27%	3408.4	13.36%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-3.853e-01	0.9484	260.0	0.98%	258.0	1.01%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-3.839e-01	0.9484	2560.0	9.69%	2493.7	9.78%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-3.617e-01	0.9618	10199.0	38.61%	9885.5	38.76%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-3.559e-01	0.9633	5280.0	19.99%	5130.8	20.12%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-3.543e-01	0.9633	2682.0	10.15%	2614.7	10.25%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-3.516e-01	0.9633	2193.0	8.30%	2140.6	8.39%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-3.281e-01	0.9778	1644.0	6.22%	1609.0	6.31%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-3.193e-01	0.9822	1455.0	5.51%	1426.0	5.59%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-3.117e-01	0.9855	3026.0	11.45%	2952.9	11.58%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-2.773e-01	1.0000	64.0	0.24%	67.2	0.26%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.273e-01	1.0000	574.0	2.17%	573.5	2.25%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.245e-01	1.0000	470.0	1.78%	471.5	1.85%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.938e-01	1.0000	4600.0	17.41%	4496.4	17.63%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.915e-01	1.0000	2516.0	9.52%	2472.6	9.69%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.705e-01	1.0000	440.0	1.67%	445.4	1.75%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.659e-01	1.0000	611.0	2.31%	614.0	2.41%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.642e-01	1.0000	2867.0	10.85%	2818.3	11.05%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.634e-01	1.0000	1863.0	7.05%	1840.2	7.22%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.596e-01	1.0000	6002.0	22.72%	5864.0	22.99%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.305e-01	1.0000	316.0	1.20%	325.6	1.28%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.216e-01	1.0000	639.0	2.42%	646.6	2.54%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.203e-01	1.0000	3544.0	13.42%	3486.4	13.67%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.139e-01	1.0000	2997.0	11.34%	2955.7	11.59%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.027e-01	1.0000	823.0	3.12%	830.3	3.26%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-7.955e-02	1.0000	1513.0	5.73%	1513.5	5.93%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-6.595e-02	1.0000	5099.0	19.30%	5017.9	19.67%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-6.528e-02	1.0000	962.0	3.64%	974.5	3.82%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-6.509e-02	1.0000	3234.0	12.24%	3201.5	12.55%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-6.319e-02	1.0000	4179.0	15.82%	4123.1	16.17%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-6.157e-02	1.0000	3168.0	11.99%	3138.2	12.30%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-5.738e-02	1.0000	7435.0	28.14%	7290.4	28.58%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-3.388e-02	1.0000	253.0	0.96%	273.8	1.07%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-3.171e-02	1.0000	1377.0	5.21%	1395.5	5.47%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.975e-02	1.0000	1995.0	7.55%	2005.6	7.86%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.909e-02	1.0000	843.0	3.19%	867.7	3.40%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.885e-02	1.0000	13779.0	52.16%	13451.4	52.74%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-2.783e-02	1.0000	48.0	0.18%	60.0	0.24%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.776e-02	1.0000	102.0	0.39%	118.1	0.46%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.734e-02	1.0000	777.0	2.94%	802.3	3.15%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.530e-02	1.0000	721.0	2.73%	747.3	2.93%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-2.206e-02	1.0000	41.0	0.16%	53.3	0.21%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.794e-02	1.0000	3886.0	14.71%	3869.0	15.17%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.661e-02	1.0000	97.0	0.37%	115.2	0.45%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.524e-02	1.0000	2941.0	11.13%	2947.1	11.56%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-7.248e-03	1.0000	4877.0	18.46%	4858.5	19.05%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-5.141e-03	1.0000	3017.0	11.42%	3042.2	11.93%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-4.641e-03	1.0000	1000.0	3.79%	1045.5	4.10%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.070e-03	1.0000	287.0	1.09%	322.3	1.26%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.783e-03	1.0000	1821.0	6.89%	1870.4	7.33%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.619e-03	1.0000	376.0	1.42%	417.7	1.64%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.476e-03	1.0000	548.0	2.07%	594.9	2.33%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.321e-03	1.0000	12322.0	46.64%	12117.1	47.51%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.032e-03	1.0000	1077.0	4.08%	1131.7	4.44%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.360e-03	1.0000	1065.0	4.03%	1123.9	4.41%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-8.130e-04	1.0000	1484.0	5.62%	1549.8	6.08%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-7.180e-04	1.0000	706.0	2.67%	765.8	3.00%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-5.540e-04	1.0000	70.0	0.26%	98.0	0.38%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-5.310e-04	1.0000	7624.0	28.86%	7594.9	29.78%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-4.420e-04	1.0000	635.0	2.40%	696.1	2.73%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-4.250e-04	1.0000	262.0	0.99%	308.9	1.21%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-3.700e-04	1.0000	1126.0	4.26%	1197.8	4.70%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.030e-04	1.0000	1614.0	6.11%	1690.3	6.63%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-2.670e-04	1.0000	725.0	2.74%	792.8	3.11%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.900e-04	1.0000	636.0	2.41%	703.7	2.76%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.820e-04	1.0000	10061.0	38.08%	9985.3	39.15%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.040e-04	1.0000	1042.0	3.94%	1123.5	4.41%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-9.100e-05	1.0000	9674.0	36.62%	9623.1	37.73%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-7.500e-05	1.0000	502.0	1.90%	570.8	2.24%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-2.500e-05	1.0000	79.0	0.30%	116.6	0.46%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.000e-05	1.0000	2942.0	11.14%	3047.0	11.95%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.400e-05	1.0000	440.0	1.67%	514.3	2.02%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-3.000e-06	1.0000	386.0	1.46%	465.0	1.82%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-2.000e-06	1.0000	9434.0	35.71%	9460.2	37.09%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-0.000e+00	1.0000	7812.0	29.57%	7937.4	31.12%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-0.000e+00	1.0000	18.0	0.07%	53.2	0.21%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-0.000e+00	1.0000	799.0	3.02%	941.2	3.69%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-0.000e+00	1.0000	9602.0	36.35%	9760.3	38.27%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-0.000e+00	1.0000	12410.0	46.98%	12546.2	49.19%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-0.000e+00	1.0000	2939.0	11.12%	3227.8	12.66%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-0.000e+00	1.0000	9810.0	37.13%	10084.8	39.54%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-0.000e+00	1.0000	9917.0	37.54%	10197.6	39.98%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	8034.0	30.41%	8556.7	33.55%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	7784.0	29.46%	8340.7	32.70%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	5502.0	20.83%	6279.2	24.62%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	0.000e+00	1.0000	10015.0	37.91%	10339.7	40.54%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	511.0	1.93%	858.9	3.37%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	2059.0	7.79%	2874.5	11.27%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	0.000e+00	1.0000	3523.0	13.34%	4208.8	16.50%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	2231.0	8.44%	3084.4	12.09%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	0.000e+00	1.0000	3724.0	14.10%	4070.1	15.96%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	2472.0	9.36%	2800.3	10.98%