Information for 21-CGGATTGA (Motif 14)


Reverse Opposite:

p-value:1e-10
log p-value:-2.470e+01
Information Content per bp:1.784
Number of Target Sequences with motif1496.0
Percentage of Target Sequences with motif22.60%
Number of Background Sequences with motif7242.6
Percentage of Background Sequences with motif19.05%
Average Position of motif in Targets1045.4 +/- 556.3bp
Average Position of motif in Background1036.2 +/- 664.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

OTX1/MA0711.1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CGGATTGA
CGGATTAN

PH0126.1_Obox6/Jaspar

Match Rank:2
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----CGGATTGA--
AAAAACGGATTATTG

OTX2/MA0712.1/Jaspar

Match Rank:3
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CGGATTGA
NGGATTAA

Dmbx1/MA0883.1/Jaspar

Match Rank:4
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----CGGATTGA----
TGAACCGGATTAATGAA

PH0025.1_Dmbx1/Jaspar

Match Rank:5
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----CGGATTGA----
TGAACCGGATTAATGAA

PH0035.1_Gsc/Jaspar

Match Rank:6
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----CGGATTGA-----
NNAAGGGATTAACGANT

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CGGATTGA-----
AGAGGGGATTAATTTAT

PH0130.1_Otx2/Jaspar

Match Rank:8
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CGGATTGA-----
TGTAGGGATTAATTGTC

PH0138.1_Pitx2/Jaspar

Match Rank:9
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CGGATTGA-----
TGAAGGGATTAATCATC

PITX3/MA0714.1/Jaspar

Match Rank:10
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CGGATTGA-
GGGATTANN