Information for 16-TTTGAG (Motif 19)


Reverse Opposite:

p-value:1e-3
log p-value:-8.560e+00
Information Content per bp:1.530
Number of Target Sequences with motif3570.0
Percentage of Target Sequences with motif53.94%
Number of Background Sequences with motif19607.3
Percentage of Background Sequences with motif51.56%
Average Position of motif in Targets1024.8 +/- 622.4bp
Average Position of motif in Background1011.7 +/- 724.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.49
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TTTGAG--
CCTTTGATGT

PB0082.1_Tcf3_1/Jaspar

Match Rank:2
Score:0.70
Offset:-6
Orientation:reverse strand
Alignment:------TTTGAG-----
NNTTCCTTTGATCTANA

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TTTGAG----
TTTGAAACCG

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TTTGAG-----
CTTGAGTGGCT

TCF7L2/MA0523.1/Jaspar

Match Rank:5
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TTTGAG----
TNCCTTTGATCTTN

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:6
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------TTTGAG-----
ATTTCCTTTGATCTATA

PB0083.1_Tcf7_1/Jaspar

Match Rank:7
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------TTTGAG-----
NNTTCCTTTGATCTNNA

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:8
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TTTGAG--
TNCCTTTGATGT

PB0040.1_Lef1_1/Jaspar

Match Rank:9
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------TTTGAG-----
AATCCCTTTGATCTATC

LIN54/MA0619.1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TTTGAG--
ATTTGAATT