Information for 18-GCATA (Motif 21)


Reverse Opposite:

p-value:1e-2
log p-value:-5.665e+00
Information Content per bp:1.530
Number of Target Sequences with motif3884.0
Percentage of Target Sequences with motif58.68%
Number of Background Sequences with motif21633.5
Percentage of Background Sequences with motif56.89%
Average Position of motif in Targets993.9 +/- 635.4bp
Average Position of motif in Background974.5 +/- 720.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.66
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POU3F4/MA0789.1/Jaspar

Match Rank:1
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----GCATA
ATTTGCATA

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.76
Offset:-7
Orientation:forward strand
Alignment:-------GCATA-----
AAAATATGCATAATAAA

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GCATA---
ATGMATATDC

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----GCATA-
ATTTGCATAA

POU2F1/MA0785.1/Jaspar

Match Rank:5
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----GCATA--
AATTTGCATANT

Pou2f3/MA0627.1/Jaspar

Match Rank:6
Score:0.72
Offset:-8
Orientation:reverse strand
Alignment:--------GCATA---
TNTAATTTGCATACNA

PH0145.1_Pou2f3/Jaspar

Match Rank:7
Score:0.72
Offset:-8
Orientation:reverse strand
Alignment:--------GCATA---
TNTAATTTGCATACNA

POU5F1B/MA0792.1/Jaspar

Match Rank:8
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----GCATA
ATTTGCATA

PH0144.1_Pou2f2/Jaspar

Match Rank:9
Score:0.72
Offset:-8
Orientation:reverse strand
Alignment:--------GCATA---
TNTAATTTGCATANNN

POU3F1/MA0786.1/Jaspar

Match Rank:10
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------GCATA-
TAATTTGCATAA