Information for 21-GCTGT (Motif 23)


Reverse Opposite:

p-value:1e-1
log p-value:-3.018e+00
Information Content per bp:1.530
Number of Target Sequences with motif6421.0
Percentage of Target Sequences with motif97.01%
Number of Background Sequences with motif36734.1
Percentage of Background Sequences with motif96.61%
Average Position of motif in Targets1055.8 +/- 550.6bp
Average Position of motif in Background1047.5 +/- 646.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)3.59
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.90
Offset:0
Orientation:forward strand
Alignment:GCTGT-
GCTGTG

PH0158.1_Rhox11_2/Jaspar

Match Rank:2
Score:0.83
Offset:-5
Orientation:forward strand
Alignment:-----GCTGT-------
AGGACGCTGTAAAGGGA

Rhox11/MA0629.1/Jaspar

Match Rank:3
Score:0.83
Offset:-5
Orientation:forward strand
Alignment:-----GCTGT-------
AAGACGCTGTAAAGCGA

PH0157.1_Rhox11_1/Jaspar

Match Rank:4
Score:0.83
Offset:-5
Orientation:forward strand
Alignment:-----GCTGT-------
AAGACGCTGTAAAGCGA

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-GCTGT
NGCTN-

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:6
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--GCTGT-
CAGCTGTT

Tcf12/MA0521.1/Jaspar

Match Rank:7
Score:0.77
Offset:-5
Orientation:reverse strand
Alignment:-----GCTGT-
NNGCAGCTGTT

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:8
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---GCTGT--
CCAGCTGTTN

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:9
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---GCTGT--
ACAGCTGTTV

Myog/MA0500.1/Jaspar

Match Rank:10
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----GCTGT-
NNGCAGCTGTC