Information for 24-AGGGAA (Motif 25)


Reverse Opposite:

p-value:1e0
log p-value:-1.385e+00
Information Content per bp:1.530
Number of Target Sequences with motif5227.0
Percentage of Target Sequences with motif78.97%
Number of Background Sequences with motif29884.8
Percentage of Background Sequences with motif78.59%
Average Position of motif in Targets1038.7 +/- 577.6bp
Average Position of motif in Background1028.3 +/- 673.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.85
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFATC1/MA0624.1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-AGGGAA---
NNTGGAAANN

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--AGGGAA--
CSTGGGAAAD

E2F6/MA0471.1/Jaspar

Match Rank:3
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---AGGGAA--
GGGCGGGAAGG

NFATC3/MA0625.1/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AGGGAA---
AATGGAAAAT

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---AGGGAA---
GAAAGTGAAAGT

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AGGGAA--
GGCGGGAARN

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGGGAA-----
-TGGAACAGMA

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AGGGAA-
NACAGGAAAT

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:9
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AGGGAA
CWGGCGGGAA

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AGGGAA-
TNNGGGCAG