Information for 3-CGTAAA (Motif 3)


Reverse Opposite:

p-value:1e-22
log p-value:-5.145e+01
Information Content per bp:1.877
Number of Target Sequences with motif4126.0
Percentage of Target Sequences with motif62.34%
Number of Background Sequences with motif21248.0
Percentage of Background Sequences with motif55.88%
Average Position of motif in Targets1026.8 +/- 561.9bp
Average Position of motif in Background1025.9 +/- 700.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.72
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD12/MA0873.1/Jaspar

Match Rank:1
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---CGTAAA--
AGTCGTAAAAA

HOXC12/MA0906.1/Jaspar

Match Rank:2
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---CGTAAA--
GGTCGTAAAAA

PH0077.1_Hoxd12/Jaspar

Match Rank:3
Score:0.81
Offset:-6
Orientation:forward strand
Alignment:------CGTAAA-----
CAAGGTCGTAAAATCTT

HOXC11/MA0651.1/Jaspar

Match Rank:4
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---CGTAAA--
GGTCGTAAAAT

PH0067.1_Hoxc12/Jaspar

Match Rank:5
Score:0.80
Offset:-6
Orientation:forward strand
Alignment:------CGTAAA-----
TTAGGTCGTAAAATTTC

HOXD11/MA0908.1/Jaspar

Match Rank:6
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--CGTAAA--
GTCGTAAAAA

Hoxa11/MA0911.1/Jaspar

Match Rank:7
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---CGTAAA---
GGTCGTAAAATT

PH0065.1_Hoxc10/Jaspar

Match Rank:8
Score:0.79
Offset:-6
Orientation:forward strand
Alignment:------CGTAAA----
TAAAGTCGTAAAACGT

PH0048.1_Hoxa13/Jaspar

Match Rank:9
Score:0.79
Offset:-6
Orientation:forward strand
Alignment:------CGTAAA----
AAACCTCGTAAAATTT

HOXC13/MA0907.1/Jaspar

Match Rank:10
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---CGTAAA--
GCTCGTAAAAA