Information for 4-TAGTTCG (Motif 4)


Reverse Opposite:

p-value:1e-19
log p-value:-4.487e+01
Information Content per bp:1.771
Number of Target Sequences with motif3369.0
Percentage of Target Sequences with motif50.90%
Number of Background Sequences with motif17043.0
Percentage of Background Sequences with motif44.82%
Average Position of motif in Targets1046.7 +/- 528.8bp
Average Position of motif in Background1032.0 +/- 656.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0058.1_Sfpi1_1/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TAGTTCG------
NNACTTCCTCTTNN

HMBOX1/MA0895.1/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TAGTTCG-
ACTAGTTAAC

PB0161.1_Rxra_2/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TAGTTCG----
TCGCGAAGGTTGTACT

PAX4/MA0068.2/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TAGTTCG
CTAATTAG

PB0173.1_Sox21_2/Jaspar

Match Rank:5
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------TAGTTCG----
AATCAATTGTTCCGCTA

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TAGTTCG
YCTTTGTTCC

PB0115.1_Ehf_2/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TAGTTCG------
TAGTATTTCCGATCTT

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----TAGTTCG
NCCATTGTTC-

PB0012.1_Elf3_1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TAGTTCG-----
TTACTTCCTNGTN

PB0072.1_Sox5_1/Jaspar

Match Rank:10
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------TAGTTCG---
NNTTTATTGTTCTNNN