Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 6619)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 38028)	% of Background Sequences with Motif
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-37	-8.525e+01	0.0000	4401.0	66.49%	22128.6	58.19%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-31	-7.270e+01	0.0000	4290.0	64.81%	21723.5	57.13%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-28	-6.631e+01	0.0000	3819.0	57.70%	19101.2	50.23%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-24	-5.681e+01	0.0000	2759.0	41.68%	13310.9	35.01%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-23	-5.523e+01	0.0000	3928.0	59.34%	19995.8	52.59%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-22	-5.111e+01	0.0000	5197.0	78.52%	27708.3	72.87%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-20	-4.702e+01	0.0000	905.0	13.67%	3702.3	9.74%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-16	-3.862e+01	0.0000	747.0	11.29%	3053.3	8.03%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-15	-3.474e+01	0.0000	4358.0	65.84%	23081.1	60.70%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-14	-3.336e+01	0.0000	4379.0	66.16%	23248.9	61.14%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-11	-2.649e+01	0.0000	5215.0	78.79%	28477.6	74.89%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-11	-2.553e+01	0.0000	5878.0	88.80%	32615.2	85.77%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-11	-2.539e+01	0.0000	3234.0	48.86%	16880.1	44.39%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-9	-2.285e+01	0.0000	6062.0	91.58%	33860.4	89.05%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-8	-2.016e+01	0.0000	4452.0	67.26%	24145.2	63.50%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-8	-2.005e+01	0.0000	4563.0	68.94%	24804.9	65.23%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-8	-1.981e+01	0.0000	3274.0	49.46%	17327.3	45.57%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-8	-1.947e+01	0.0000	762.0	11.51%	3493.9	9.19%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-8	-1.946e+01	0.0000	6266.0	94.67%	35270.7	92.76%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-8	-1.843e+01	0.0000	1960.0	29.61%	9987.1	26.26%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-7	-1.840e+01	0.0000	2845.0	42.98%	14945.8	39.31%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-7	-1.806e+01	0.0000	1930.0	29.16%	9835.9	25.87%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-7	-1.728e+01	0.0000	4404.0	66.54%	23984.9	63.08%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-7	-1.651e+01	0.0000	5100.0	77.05%	28141.7	74.01%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-6	-1.389e+01	0.0000	3231.0	48.81%	17353.8	45.64%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-5	-1.318e+01	0.0000	3903.0	58.97%	21259.9	55.91%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-5	-1.258e+01	0.0000	3913.0	59.12%	21349.1	56.14%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-5	-1.224e+01	0.0001	1761.0	26.61%	9143.2	24.05%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-5	-1.184e+01	0.0001	2936.0	44.36%	15777.8	41.49%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-4	-1.094e+01	0.0002	673.0	10.17%	3259.3	8.57%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-4	-1.070e+01	0.0002	5112.0	77.23%	28478.1	74.89%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-4	-1.031e+01	0.0003	4519.0	68.27%	25006.0	65.76%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-4	-1.014e+01	0.0004	5239.0	79.15%	29262.3	76.96%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-4	-9.833e+00	0.0005	5216.0	78.80%	29141.2	76.64%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-4	-9.797e+00	0.0005	244.0	3.69%	1059.5	2.79%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-3	-9.080e+00	0.0010	2864.0	43.27%	15529.1	40.84%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-3	-8.618e+00	0.0016	1459.0	22.04%	7645.4	20.11%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-3	-8.359e+00	0.0020	1637.0	24.73%	8650.6	22.75%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-3	-8.258e+00	0.0021	1288.0	19.46%	6716.8	17.66%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-3	-8.106e+00	0.0024	5917.0	89.39%	33433.3	87.92%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-3	-7.748e+00	0.0034	5025.0	75.92%	28130.2	73.98%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-2	-6.654e+00	0.0098	33.0	0.50%	98.7	0.26%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-2	-6.488e+00	0.0113	747.0	11.29%	3828.6	10.07%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-2	-6.404e+00	0.0120	2783.0	42.05%	15254.0	40.12%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-2	-6.392e+00	0.0120	3043.0	45.97%	16739.0	44.02%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-2	-5.770e+00	0.0216	505.0	7.63%	2544.5	6.69%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-2	-5.619e+00	0.0246	1557.0	23.52%	8373.9	22.02%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-5.561e+00	0.0256	5210.0	78.71%	29365.7	77.23%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-2	-5.542e+00	0.0256	212.0	3.20%	992.9	2.61%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-2	-5.521e+00	0.0256	405.0	6.12%	2015.7	5.30%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-5.495e+00	0.0257	2019.0	30.50%	10985.5	28.89%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-2	-5.082e+00	0.0381	5837.0	88.19%	33109.2	87.07%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-2	-5.042e+00	0.0389	610.0	9.22%	3148.1	8.28%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-2	-5.004e+00	0.0396	1349.0	20.38%	7250.5	19.07%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-2	-4.831e+00	0.0463	1577.0	23.83%	8543.6	22.47%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-4.676e+00	0.0531	6451.0	97.46%	36856.1	96.93%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-2	-4.648e+00	0.0536	2112.0	31.91%	11581.4	30.46%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-4.190e+00	0.0833	2112.0	31.91%	11622.7	30.57%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-4.179e+00	0.0833	1244.0	18.79%	6722.8	17.68%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-4.137e+00	0.0849	3425.0	51.74%	19129.1	50.31%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-4.108e+00	0.0859	624.0	9.43%	3274.9	8.61%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-3.993e+00	0.0949	678.0	10.24%	3579.4	9.41%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-1	-3.962e+00	0.0963	11.0	0.17%	27.3	0.07%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-3.884e+00	0.1025	3578.0	54.06%	20035.4	52.69%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-3.804e+00	0.1094	2806.0	42.39%	15615.5	41.07%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-3.761e+00	0.1124	1950.0	29.46%	10743.4	28.25%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-3.715e+00	0.1160	4770.0	72.07%	26947.8	70.87%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-3.650e+00	0.1220	556.0	8.40%	2925.5	7.69%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-3.607e+00	0.1255	2630.0	39.73%	14630.4	38.48%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-3.554e+00	0.1303	3741.0	56.52%	21009.2	55.25%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-3.543e+00	0.1303	5278.0	79.74%	29926.8	78.70%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-3.523e+00	0.1307	793.0	11.98%	4248.0	11.17%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.516e+00	0.1307	2236.0	33.78%	12394.0	32.59%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-3.514e+00	0.1307	6209.0	93.81%	35428.8	93.17%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.468e+00	0.1327	583.0	8.81%	3085.4	8.11%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-1	-3.467e+00	0.1327	65.0	0.98%	285.1	0.75%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-3.425e+00	0.1349	781.0	11.80%	4188.5	11.02%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-3.405e+00	0.1359	1761.0	26.61%	9706.8	25.53%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-3.404e+00	0.1359	651.0	9.84%	3466.4	9.12%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-3.355e+00	0.1392	1132.0	17.10%	6159.0	16.20%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-3.312e+00	0.1435	676.0	10.21%	3611.1	9.50%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-3.293e+00	0.1444	1713.0	25.88%	9445.9	24.84%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-3.289e+00	0.1444	5238.0	79.14%	29716.4	78.15%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-3.110e+00	0.1694	2558.0	38.65%	14274.0	37.54%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-3.096e+00	0.1697	602.0	9.10%	3214.6	8.45%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-1	-3.065e+00	0.1730	49.0	0.74%	212.0	0.56%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-3.045e+00	0.1746	4515.0	68.21%	25538.3	67.16%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-2.957e+00	0.1884	6262.0	94.61%	35778.1	94.09%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-1	-2.908e+00	0.1957	2351.0	35.52%	13116.9	34.50%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-2.765e+00	0.2232	541.0	8.17%	2897.5	7.62%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-2.722e+00	0.2305	3635.0	54.92%	20498.7	53.91%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-2.632e+00	0.2493	198.0	2.99%	1013.0	2.66%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-2.593e+00	0.2565	282.0	4.26%	1474.2	3.88%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-2.493e+00	0.2806	2660.0	40.19%	14934.8	39.28%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-2.427e+00	0.2965	2425.0	36.64%	13600.0	35.77%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-2.425e+00	0.2965	4173.0	63.05%	23638.2	62.16%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-2.406e+00	0.2965	4600.0	69.50%	26108.5	68.66%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-2.343e+00	0.3125	1823.0	27.54%	10176.3	26.76%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-2.336e+00	0.3125	776.0	11.72%	4246.9	11.17%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.302e+00	0.3191	317.0	4.79%	1683.7	4.43%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-2.244e+00	0.3348	3215.0	48.57%	18150.3	47.73%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.152e+00	0.3637	4314.0	65.18%	24490.5	64.41%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.142e+00	0.3637	6268.0	94.70%	35866.2	94.32%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.138e+00	0.3637	2707.0	40.90%	15253.7	40.11%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.136e+00	0.3637	1464.0	22.12%	8160.1	21.46%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.109e+00	0.3651	743.0	11.23%	4081.3	10.73%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.091e+00	0.3684	4563.0	68.94%	25937.2	68.21%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.077e+00	0.3699	531.0	8.02%	2892.9	7.61%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.075e+00	0.3699	1941.0	29.32%	10884.5	28.62%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.070e+00	0.3699	2190.0	33.09%	12306.7	32.36%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.066e+00	0.3699	2399.0	36.24%	13501.6	35.51%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-2.011e+00	0.3814	2262.0	34.17%	12726.5	33.47%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.862e+00	0.4387	1666.0	25.17%	9346.3	24.58%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.834e+00	0.4471	410.0	6.19%	2233.9	5.87%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.796e+00	0.4603	1898.0	28.68%	10679.4	28.09%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.792e+00	0.4603	5761.0	87.04%	32925.3	86.59%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.792e+00	0.4603	2966.0	44.81%	16792.2	44.16%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.778e+00	0.4603	4440.0	67.08%	25274.1	66.47%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.775e+00	0.4603	225.0	3.40%	1204.0	3.17%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.772e+00	0.4603	753.0	11.38%	4171.2	10.97%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.737e+00	0.4641	3112.0	47.02%	17639.7	46.39%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.676e+00	0.4895	1266.0	19.13%	7094.1	18.66%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.666e+00	0.4902	78.0	1.18%	399.2	1.05%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.640e+00	0.4992	964.0	14.56%	5382.1	14.15%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.638e+00	0.4992	1138.0	17.19%	6371.2	16.76%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.570e+00	0.5266	4516.0	68.23%	25747.8	67.71%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.566e+00	0.5266	1025.0	15.49%	5738.9	15.09%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.522e+00	0.5440	1513.0	22.86%	8524.1	22.42%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.444e+00	0.5838	1004.0	15.17%	5635.3	14.82%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.374e+00	0.6212	2761.0	41.71%	15692.8	41.27%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.373e+00	0.6212	2164.0	32.69%	12271.2	32.27%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.366e+00	0.6212	1308.0	19.76%	7379.9	19.41%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.353e+00	0.6212	954.0	14.41%	5363.7	14.11%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.300e+00	0.6490	1194.0	18.04%	6739.4	17.72%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.265e+00	0.6667	1582.0	23.90%	8961.9	23.57%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.242e+00	0.6774	530.0	8.01%	2966.9	7.80%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.225e+00	0.6837	14.0	0.21%	66.0	0.17%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.218e+00	0.6841	2670.0	40.34%	15202.0	39.98%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.194e+00	0.6952	1845.0	27.87%	10479.4	27.56%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.170e+00	0.7074	1098.0	16.59%	6212.5	16.34%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.159e+00	0.7096	101.0	1.53%	548.0	1.44%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.140e+00	0.7182	743.0	11.23%	4191.8	11.02%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.128e+00	0.7221	493.0	7.45%	2769.9	7.28%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.102e+00	0.7361	442.0	6.68%	2482.9	6.53%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.074e+00	0.7513	55.0	0.83%	295.2	0.78%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.070e+00	0.7513	3377.0	51.02%	19294.5	50.74%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.035e+00	0.7706	2395.0	36.18%	13665.8	35.94%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.017e+00	0.7793	299.0	4.52%	1678.7	4.41%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.002e+00	0.7862	4318.0	65.24%	24720.8	65.01%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-9.962e-01	0.7862	1928.0	29.13%	10996.9	28.92%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-9.916e-01	0.7862	2267.0	34.25%	12941.3	34.03%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-9.825e-01	0.7862	5461.0	82.50%	31306.5	82.33%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-9.259e-01	0.8260	1857.0	28.06%	10605.4	27.89%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-9.212e-01	0.8260	634.0	9.58%	3601.7	9.47%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-9.161e-01	0.8260	4494.0	67.90%	25753.4	67.73%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-9.080e-01	0.8260	2013.0	30.41%	11504.3	30.25%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-8.876e-01	0.8364	1264.0	19.10%	7214.0	18.97%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-8.749e-01	0.8417	306.0	4.62%	1733.8	4.56%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-8.367e-01	0.8690	213.0	3.22%	1206.0	3.17%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-8.359e-01	0.8690	135.0	2.04%	761.8	2.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-8.140e-01	0.8779	42.0	0.63%	233.6	0.61%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-7.972e-01	0.8872	990.0	14.96%	5662.7	14.89%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-7.953e-01	0.8872	2127.0	32.13%	12187.8	32.05%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-7.889e-01	0.8872	1152.0	17.40%	6593.4	17.34%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-7.775e-01	0.8885	1154.0	17.43%	6607.2	17.38%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-7.722e-01	0.8885	3151.0	47.61%	18074.2	47.53%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-7.656e-01	0.8885	1145.0	17.30%	6558.5	17.25%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-7.553e-01	0.8922	225.0	3.40%	1283.7	3.38%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-7.499e-01	0.8922	1224.0	18.49%	7015.2	18.45%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-7.484e-01	0.8922	491.0	7.42%	2809.7	7.39%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-7.317e-01	0.8975	1663.0	25.12%	9540.7	25.09%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-7.214e-01	0.9015	6075.0	91.78%	34890.7	91.76%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-7.057e-01	0.9105	4836.0	73.06%	27774.2	73.04%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-6.882e-01	0.9212	1858.0	28.07%	10672.7	28.07%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-6.689e-01	0.9338	5184.0	78.32%	29783.4	78.33%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-6.618e-01	0.9351	2564.0	38.74%	14736.5	38.75%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-6.589e-01	0.9351	176.0	2.66%	1012.1	2.66%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-6.491e-01	0.9364	5367.0	81.08%	30839.3	81.10%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-6.273e-01	0.9517	224.0	3.38%	1292.5	3.40%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.221e-01	0.9517	2343.0	35.40%	13479.7	35.45%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-6.213e-01	0.9517	4308.0	65.09%	24767.6	65.13%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-6.152e-01	0.9517	348.0	5.26%	2008.9	5.28%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-6.051e-01	0.9518	2803.0	42.35%	16128.1	42.41%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-6.021e-01	0.9518	1598.0	24.14%	9203.4	24.20%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-5.759e-01	0.9694	145.0	2.19%	842.2	2.21%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-5.757e-01	0.9694	608.0	9.19%	3513.5	9.24%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-5.503e-01	0.9839	1909.0	28.84%	11008.8	28.95%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-5.500e-01	0.9839	224.0	3.38%	1302.5	3.43%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-5.463e-01	0.9839	3404.0	51.43%	19602.5	51.55%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-5.429e-01	0.9839	837.0	12.65%	4840.5	12.73%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-5.339e-01	0.9839	2675.0	40.41%	15418.3	40.55%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-5.253e-01	0.9839	788.0	11.91%	4562.5	12.00%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-5.221e-01	0.9839	1439.0	21.74%	8313.9	21.86%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-5.165e-01	0.9839	716.0	10.82%	4149.6	10.91%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-4.968e-01	0.9954	342.0	5.17%	1993.7	5.24%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-4.952e-01	0.9954	2857.0	43.16%	16479.9	43.34%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-4.745e-01	1.0000	4785.0	72.29%	27555.7	72.47%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-4.694e-01	1.0000	1201.0	18.14%	6959.7	18.30%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-4.669e-01	1.0000	615.0	9.29%	3578.6	9.41%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-4.537e-01	1.0000	1719.0	25.97%	9949.3	26.17%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-4.520e-01	1.0000	2096.0	31.67%	12120.2	31.87%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-4.511e-01	1.0000	1777.0	26.85%	10284.9	27.05%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-4.503e-01	1.0000	2164.0	32.69%	12512.0	32.90%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-4.213e-01	1.0000	1591.0	24.04%	9224.9	24.26%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-4.088e-01	1.0000	43.0	0.65%	262.8	0.69%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-3.962e-01	1.0000	698.0	10.55%	4077.4	10.72%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-3.959e-01	1.0000	3890.0	58.77%	22455.7	59.06%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-3.915e-01	1.0000	5715.0	86.34%	32906.7	86.54%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-3.783e-01	1.0000	2406.0	36.35%	13936.1	36.65%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.748e-01	1.0000	1697.0	25.64%	9854.6	25.92%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-3.690e-01	1.0000	3621.0	54.71%	20924.5	55.03%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-3.624e-01	1.0000	555.0	8.38%	3258.9	8.57%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-3.581e-01	1.0000	1478.0	22.33%	8598.9	22.61%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-3.541e-01	1.0000	111.0	1.68%	670.9	1.76%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-3.518e-01	1.0000	2978.0	44.99%	17239.8	45.34%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-3.484e-01	1.0000	4875.0	73.65%	28122.4	73.96%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-3.399e-01	1.0000	594.0	8.97%	3491.4	9.18%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-3.287e-01	1.0000	1042.0	15.74%	6092.0	16.02%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-3.276e-01	1.0000	3657.0	55.25%	21152.7	55.63%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-3.248e-01	1.0000	2042.0	30.85%	11866.3	31.21%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-3.227e-01	1.0000	494.0	7.46%	2915.9	7.67%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-3.162e-01	1.0000	4566.0	68.98%	26369.9	69.35%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.159e-01	1.0000	166.0	2.51%	1000.3	2.63%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-3.132e-01	1.0000	3923.0	59.27%	22686.1	59.66%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-3.100e-01	1.0000	747.0	11.29%	4389.2	11.54%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-3.083e-01	1.0000	310.0	4.68%	1846.3	4.86%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-3.080e-01	1.0000	4516.0	68.23%	26087.9	68.61%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-3.076e-01	1.0000	2696.0	40.73%	15641.3	41.13%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-3.064e-01	1.0000	510.0	7.71%	3013.6	7.93%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-3.021e-01	1.0000	3833.0	57.91%	22176.8	58.32%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.976e-01	1.0000	1667.0	25.19%	9717.5	25.56%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.939e-01	1.0000	314.0	4.74%	1873.9	4.93%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.936e-01	1.0000	778.0	11.75%	4575.6	12.03%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.934e-01	1.0000	123.0	1.86%	750.7	1.97%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.876e-01	1.0000	970.0	14.65%	5691.1	14.97%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.867e-01	1.0000	89.0	1.34%	549.0	1.44%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.814e-01	1.0000	5861.0	88.55%	33776.4	88.83%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.785e-01	1.0000	278.0	4.20%	1666.2	4.38%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.784e-01	1.0000	1551.0	23.43%	9057.9	23.82%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.722e-01	1.0000	1144.0	17.28%	6706.1	17.64%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-2.628e-01	1.0000	553.0	8.35%	3278.5	8.62%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-2.517e-01	1.0000	2393.0	36.15%	13930.8	36.64%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.492e-01	1.0000	1062.0	16.04%	6242.7	16.42%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.453e-01	1.0000	1333.0	20.14%	7814.1	20.55%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.427e-01	1.0000	3748.0	56.62%	21725.5	57.13%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.312e-01	1.0000	559.0	8.45%	3325.8	8.75%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.193e-01	1.0000	650.0	9.82%	3861.4	10.15%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.080e-01	1.0000	4550.0	68.74%	26342.8	69.28%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.991e-01	1.0000	1704.0	25.74%	9989.8	26.27%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.983e-01	1.0000	99.0	1.50%	624.0	1.64%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.852e-01	1.0000	5769.0	87.16%	33298.8	87.57%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.817e-01	1.0000	1627.0	24.58%	9556.4	25.13%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.767e-01	1.0000	1775.0	26.82%	10416.2	27.39%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.698e-01	1.0000	425.0	6.42%	2566.1	6.75%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.583e-01	1.0000	2142.0	32.36%	12552.6	33.01%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.571e-01	1.0000	433.0	6.54%	2619.7	6.89%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.409e-01	1.0000	471.0	7.12%	2851.0	7.50%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.360e-01	1.0000	4844.0	73.18%	28079.0	73.84%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.344e-01	1.0000	449.0	6.78%	2726.0	7.17%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.280e-01	1.0000	47.0	0.71%	320.3	0.84%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.228e-01	1.0000	325.0	4.91%	1998.7	5.26%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.139e-01	1.0000	1781.0	26.91%	10508.1	27.63%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.123e-01	1.0000	3365.0	50.84%	19643.6	51.66%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.073e-01	1.0000	2502.0	37.80%	14683.1	38.61%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.054e-01	1.0000	2670.0	40.34%	15654.8	41.17%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.020e-01	1.0000	3447.0	52.08%	20127.5	52.93%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.014e-01	1.0000	557.0	8.42%	3383.9	8.90%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-9.968e-02	1.0000	4720.0	71.31%	27410.3	72.09%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-9.473e-02	1.0000	178.0	2.69%	1133.9	2.98%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-9.120e-02	1.0000	2243.0	33.89%	13209.9	34.74%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-8.952e-02	1.0000	2361.0	35.67%	13894.0	36.54%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-8.897e-02	1.0000	416.0	6.28%	2559.7	6.73%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-8.688e-02	1.0000	1328.0	20.06%	7909.5	20.80%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-8.613e-02	1.0000	2316.0	34.99%	13638.9	35.87%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-8.127e-02	1.0000	511.0	7.72%	3128.8	8.23%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-7.327e-02	1.0000	1986.0	30.00%	11749.4	30.90%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-7.211e-02	1.0000	1937.0	29.26%	11467.4	30.16%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-7.151e-02	1.0000	1047.0	15.82%	6289.2	16.54%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-7.096e-02	1.0000	3973.0	60.02%	23188.7	60.98%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-6.261e-02	1.0000	556.0	8.40%	3413.9	8.98%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-5.996e-02	1.0000	2623.0	39.63%	15455.1	40.64%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-5.982e-02	1.0000	375.0	5.67%	2340.0	6.15%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-5.967e-02	1.0000	305.0	4.61%	1921.3	5.05%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-5.934e-02	1.0000	1710.0	25.83%	10172.9	26.75%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-4.480e-02	1.0000	58.0	0.88%	417.2	1.10%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-4.344e-02	1.0000	2322.0	35.08%	13754.2	36.17%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-4.211e-02	1.0000	1091.0	16.48%	6595.2	17.34%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-3.496e-02	1.0000	4705.0	71.08%	27440.9	72.17%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.877e-02	1.0000	702.0	10.61%	4333.1	11.40%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.874e-02	1.0000	4703.0	71.05%	27448.6	72.19%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.709e-02	1.0000	795.0	12.01%	4888.8	12.86%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-2.494e-02	1.0000	631.0	9.53%	3921.6	10.31%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.331e-02	1.0000	885.0	13.37%	5431.9	14.29%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.802e-02	1.0000	31.0	0.47%	257.1	0.68%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.707e-02	1.0000	5351.0	80.84%	31153.6	81.93%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.692e-02	1.0000	1594.0	24.08%	9619.7	25.30%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.506e-02	1.0000	2667.0	40.29%	15859.4	41.71%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.273e-02	1.0000	573.0	8.66%	3616.6	9.51%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.060e-02	1.0000	520.0	7.86%	3308.9	8.70%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-9.926e-03	1.0000	4706.0	71.10%	27561.0	72.48%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-9.707e-03	1.0000	4841.0	73.14%	28326.4	74.49%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.033e-03	1.0000	204.0	3.08%	1396.1	3.67%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.033e-03	1.0000	204.0	3.08%	1396.1	3.67%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-5.954e-03	1.0000	3070.0	46.38%	18269.2	48.05%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-5.523e-03	1.0000	1432.0	21.63%	8761.7	23.04%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-4.509e-03	1.0000	878.0	13.26%	5500.9	14.47%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-4.342e-03	1.0000	2723.0	41.14%	16296.2	42.86%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-3.710e-03	1.0000	4278.0	64.63%	25216.5	66.32%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-3.043e-03	1.0000	2278.0	34.42%	13748.3	36.16%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.731e-03	1.0000	1751.0	26.45%	10684.6	28.10%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.633e-03	1.0000	1323.0	19.99%	8172.2	21.49%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.353e-03	1.0000	1650.0	24.93%	10142.2	26.67%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.242e-03	1.0000	1747.0	26.39%	10717.0	28.18%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.141e-03	1.0000	1352.0	20.43%	8398.5	22.09%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-6.200e-04	1.0000	646.0	9.76%	4212.0	11.08%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-3.800e-04	1.0000	928.0	14.02%	5937.4	15.61%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.420e-04	1.0000	2330.0	35.20%	14233.4	37.43%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.280e-04	1.0000	59.0	0.89%	538.5	1.42%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-5.900e-05	1.0000	30.0	0.45%	332.3	0.87%