| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-37 | -8.525e+01 | 0.0000 | 4401.0 | 66.49% | 22128.6 | 58.19% | motif file (matrix) |
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| 2 |  | Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-31 | -7.270e+01 | 0.0000 | 4290.0 | 64.81% | 21723.5 | 57.13% | motif file (matrix) |
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| 3 |  | Sp1(Zf)/Promoter/Homer | 1e-28 | -6.631e+01 | 0.0000 | 3819.0 | 57.70% | 19101.2 | 50.23% | motif file (matrix) |
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| 4 |  | ETS(ETS)/Promoter/Homer | 1e-24 | -5.681e+01 | 0.0000 | 2759.0 | 41.68% | 13310.9 | 35.01% | motif file (matrix) |
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| 5 |  | ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-23 | -5.523e+01 | 0.0000 | 3928.0 | 59.34% | 19995.8 | 52.59% | motif file (matrix) |
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| 6 |  | Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-22 | -5.111e+01 | 0.0000 | 5197.0 | 78.52% | 27708.3 | 72.87% | motif file (matrix) |
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| 7 |  | YY1(Zf)/Promoter/Homer | 1e-20 | -4.702e+01 | 0.0000 | 905.0 | 13.67% | 3702.3 | 9.74% | motif file (matrix) |
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| 8 |  | GFY-Staf(?,Zf)/Promoter/Homer | 1e-16 | -3.862e+01 | 0.0000 | 747.0 | 11.29% | 3053.3 | 8.03% | motif file (matrix) |
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| 9 |  | E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer | 1e-15 | -3.474e+01 | 0.0000 | 4358.0 | 65.84% | 23081.1 | 60.70% | motif file (matrix) |
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| 10 |  | GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-14 | -3.336e+01 | 0.0000 | 4379.0 | 66.16% | 23248.9 | 61.14% | motif file (matrix) |
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| 11 |  | ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-11 | -2.649e+01 | 0.0000 | 5215.0 | 78.79% | 28477.6 | 74.89% | motif file (matrix) |
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| 12 |  | KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-11 | -2.553e+01 | 0.0000 | 5878.0 | 88.80% | 32615.2 | 85.77% | motif file (matrix) |
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| 13 |  | ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer | 1e-11 | -2.539e+01 | 0.0000 | 3234.0 | 48.86% | 16880.1 | 44.39% | motif file (matrix) |
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| 14 |  | ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer | 1e-9 | -2.285e+01 | 0.0000 | 6062.0 | 91.58% | 33860.4 | 89.05% | motif file (matrix) |
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| 15 |  | ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer | 1e-8 | -2.016e+01 | 0.0000 | 4452.0 | 67.26% | 24145.2 | 63.50% | motif file (matrix) |
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| 16 |  | HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-8 | -2.005e+01 | 0.0000 | 4563.0 | 68.94% | 24804.9 | 65.23% | motif file (matrix) |
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| 17 |  | NFY(CCAAT)/Promoter/Homer | 1e-8 | -1.981e+01 | 0.0000 | 3274.0 | 49.46% | 17327.3 | 45.57% | motif file (matrix) |
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| 18 |  | GFY(?)/Promoter/Homer | 1e-8 | -1.947e+01 | 0.0000 | 762.0 | 11.51% | 3493.9 | 9.19% | motif file (matrix) |
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| 19 |  | KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-8 | -1.946e+01 | 0.0000 | 6266.0 | 94.67% | 35270.7 | 92.76% | motif file (matrix) |
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| 20 |  | NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer | 1e-8 | -1.843e+01 | 0.0000 | 1960.0 | 29.61% | 9987.1 | 26.26% | motif file (matrix) |
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| 21 |  | EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer | 1e-7 | -1.840e+01 | 0.0000 | 2845.0 | 42.98% | 14945.8 | 39.31% | motif file (matrix) |
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| 22 |  | NRF(NRF)/Promoter/Homer | 1e-7 | -1.806e+01 | 0.0000 | 1930.0 | 29.16% | 9835.9 | 25.87% | motif file (matrix) |
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| 23 |  | E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer | 1e-7 | -1.728e+01 | 0.0000 | 4404.0 | 66.54% | 23984.9 | 63.08% | motif file (matrix) |
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| 24 |  | ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer | 1e-7 | -1.651e+01 | 0.0000 | 5100.0 | 77.05% | 28141.7 | 74.01% | motif file (matrix) |
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| 25 |  | Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer | 1e-6 | -1.389e+01 | 0.0000 | 3231.0 | 48.81% | 17353.8 | 45.64% | motif file (matrix) |
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| 26 |  | Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967) | 1e-5 | -1.318e+01 | 0.0000 | 3903.0 | 58.97% | 21259.9 | 55.91% | motif file (matrix) |
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| 27 |  | SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer | 1e-5 | -1.258e+01 | 0.0000 | 3913.0 | 59.12% | 21349.1 | 56.14% | motif file (matrix) |
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| 28 |  | ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer | 1e-5 | -1.224e+01 | 0.0001 | 1761.0 | 26.61% | 9143.2 | 24.05% | motif file (matrix) |
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| 29 |  | MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-5 | -1.184e+01 | 0.0001 | 2936.0 | 44.36% | 15777.8 | 41.49% | motif file (matrix) |
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| 30 |  | E-box(bHLH)/Promoter/Homer | 1e-4 | -1.094e+01 | 0.0002 | 673.0 | 10.17% | 3259.3 | 8.57% | motif file (matrix) |
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| 31 |  | Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer | 1e-4 | -1.070e+01 | 0.0002 | 5112.0 | 77.23% | 28478.1 | 74.89% | motif file (matrix) |
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| 32 |  | EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer | 1e-4 | -1.031e+01 | 0.0003 | 4519.0 | 68.27% | 25006.0 | 65.76% | motif file (matrix) |
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| 33 |  | Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer | 1e-4 | -1.014e+01 | 0.0004 | 5239.0 | 79.15% | 29262.3 | 76.96% | motif file (matrix) |
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| 34 |  | ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-4 | -9.833e+00 | 0.0005 | 5216.0 | 78.80% | 29141.2 | 76.64% | motif file (matrix) |
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| 35 |  | GFX(?)/Promoter/Homer | 1e-4 | -9.797e+00 | 0.0005 | 244.0 | 3.69% | 1059.5 | 2.79% | motif file (matrix) |
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| 36 |  | E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer | 1e-3 | -9.080e+00 | 0.0010 | 2864.0 | 43.27% | 15529.1 | 40.84% | motif file (matrix) |
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| 37 |  | CRE(bZIP)/Promoter/Homer | 1e-3 | -8.618e+00 | 0.0016 | 1459.0 | 22.04% | 7645.4 | 20.11% | motif file (matrix) |
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| 38 |  | E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer | 1e-3 | -8.359e+00 | 0.0020 | 1637.0 | 24.73% | 8650.6 | 22.75% | motif file (matrix) |
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| 39 |  | Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-3 | -8.258e+00 | 0.0021 | 1288.0 | 19.46% | 6716.8 | 17.66% | motif file (matrix) |
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| 40 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.106e+00 | 0.0024 | 5917.0 | 89.39% | 33433.3 | 87.92% | motif file (matrix) |
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| 41 |  | CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-3 | -7.748e+00 | 0.0034 | 5025.0 | 75.92% | 28130.2 | 73.98% | motif file (matrix) |
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| 42 |  | OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-2 | -6.654e+00 | 0.0098 | 33.0 | 0.50% | 98.7 | 0.26% | motif file (matrix) |
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| 43 |  | E2F(E2F)/Hela-CellCycle-Expression/Homer | 1e-2 | -6.488e+00 | 0.0113 | 747.0 | 11.29% | 3828.6 | 10.07% | motif file (matrix) |
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| 44 |  | c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-2 | -6.404e+00 | 0.0120 | 2783.0 | 42.05% | 15254.0 | 40.12% | motif file (matrix) |
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| 45 |  | GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-2 | -6.392e+00 | 0.0120 | 3043.0 | 45.97% | 16739.0 | 44.02% | motif file (matrix) |
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| 46 |  | IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer | 1e-2 | -5.770e+00 | 0.0216 | 505.0 | 7.63% | 2544.5 | 6.69% | motif file (matrix) |
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| 47 |  | HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer | 1e-2 | -5.619e+00 | 0.0246 | 1557.0 | 23.52% | 8373.9 | 22.02% | motif file (matrix) |
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| 48 |  | MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer | 1e-2 | -5.561e+00 | 0.0256 | 5210.0 | 78.71% | 29365.7 | 77.23% | motif file (matrix) |
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| 49 |  | Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer | 1e-2 | -5.542e+00 | 0.0256 | 212.0 | 3.20% | 992.9 | 2.61% | motif file (matrix) |
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| 50 |  | CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-2 | -5.521e+00 | 0.0256 | 405.0 | 6.12% | 2015.7 | 5.30% | motif file (matrix) |
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| 51 |  | USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.495e+00 | 0.0257 | 2019.0 | 30.50% | 10985.5 | 28.89% | motif file (matrix) |
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| 52 |  | Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer | 1e-2 | -5.082e+00 | 0.0381 | 5837.0 | 88.19% | 33109.2 | 87.07% | motif file (matrix) |
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| 53 |  | ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer | 1e-2 | -5.042e+00 | 0.0389 | 610.0 | 9.22% | 3148.1 | 8.28% | motif file (matrix) |
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| 54 |  | Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.004e+00 | 0.0396 | 1349.0 | 20.38% | 7250.5 | 19.07% | motif file (matrix) |
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| 55 |  | bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.831e+00 | 0.0463 | 1577.0 | 23.83% | 8543.6 | 22.47% | motif file (matrix) |
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| 56 |  | SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-2 | -4.676e+00 | 0.0531 | 6451.0 | 97.46% | 36856.1 | 96.93% | motif file (matrix) |
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| 57 |  | HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer | 1e-2 | -4.648e+00 | 0.0536 | 2112.0 | 31.91% | 11581.4 | 30.46% | motif file (matrix) |
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